| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0069 |
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| Symbol | |
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| ID | 4020524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 84531 |
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| End bp | 86396 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637960246 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_567210 |
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| Protein GI | 91974551 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.090165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00200731 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCGACA ATCGCAACAC CATCCTCGCC GTGATTCTGT CGGGCCTCGT GTTGCTCGGC
TGGCAGTACT TCTTCAACAT CCCGCAGATG GAGAAGCAGC GCGCCGCACA GCAGGCGCAG
CAGCAGCAAG AGGCTGCCAA GCAGCAGACC CCGCCGGCGG CCACGACTCC CGGCGCGCCG
AATGCTCCGG CGGCTCCGGG TGCTCCGGGC GCGCCTGCCA ACCAGCCGGC CGCCAATGCG
CCGGTGGTCA GCCGTGACGC CGCGATTGCG GCCTCGCCGC GGATCAAGGT CGAGACCCCG
CGGCTCGACG GCACGCTGTC GCTGAAGGGC GCGCGGATCG ACGATCTGTC GCTGAGCCAG
TACCACGAAA CCGTCGATCC GAAGTCGGCG CCGATCCATC TGTTCTCGCC GTCCGGCAGC
GCCAATCCCT ACTACGCCGA GTTCGGCTGG GTCGGCGCCG CGGGCTCGAA CGTCAAGCTG
CCCGACCAGA ACACGCTGTG GGAGCAGGAA GGCAGCGGCG CGCTGACGCC GGCCAATCCG
GTAACGCTGA AATGGGACAA CGGCGAGGGC CTCACCTTCC GCCGCCAGAT CGCGGTCGAC
GATCGCTACT TGTTCACGAT CAAGGACGAC GTCACCAATG TCGGCGGCGG CCCGGTGACG
TTGTATCCGT TCGCGCTGAT CTCGCGCCAC GGCACCCCGC ATGTCGAAGG CTTCTACATC
CTGCATGAAG GCCTGATCGG CTATCTCGGC GAGCAGGGTC TGCAGGAATA CGGCTACGCC
AAGATCGACG AAGCCAAGAC GGTCGGTTTC AAGGCCACCA ACGCCTGGAT GGGCATCACC
GACAAATACT GGGCGTCGGC GCTGCTGCCC GACACCAATG CGCAGCTTCA GGCGCGGTTC
TCTTCGAACC AGGTCGGCGC CACCCGGACC TACCAGACCG ACTATCTCGA AGACGCCAAG
ACCGTTCCGA TTGGCGGCAC CGCCACCGCG ACCGCGCGGC TGTTCGCGGG CGCCAAGGAA
GCGCGCGTCG TCGGCATCAA CTTCCCGTTC GCGGGGCTCG GCGGCTACAA CCAGCAGCTC
GGGCTGAACC ATTTCGACCT GCTGATCGAC TGGGGCTGGT TCTACTTCAT CACCAAGCCG
ATGTTCCTCG CGCTCGACTT CTTCTTCCAC CTGGTCGGGA ATTTCGGCGT CGCCATTCTG
CTGGTGACGG TACTGGTCAA GCTGATCTTC CTGCCGCTGG CGAACAAGTC CTACGCCTCG
ATGGCGAAGA TGAAAGCGAT CCAGCCGCAA TTGCTTGCGC TGAAAGAGCG TCATCCGGAC
GACAAGGCGA AGCAGCAGCA GGAGATGATG GAGATCTACC GCAAGGAGAA GATCAATCCG
GTCGCCGGCT GTCTGCCGGT GCTGCTGCAG ATCCCGGTGT TCTTCTCGCT GTACAAGGTG
TTGTTCGTCA CCATCGAAAT GCGGCACGCG CCGTTCTTCG GCTGGATCCA CGACCTCTCG
GCGGCCGATC CGACCAACCT GTTCAATCTG TTCGGTCTGA TTCCCTATGA TCCAAGCACG
CTGCCGGTTA TCGGGTCGTA TCTGGTGCTC GGCGTCTGGC CGCTGGTGAT GGGCTTCACG
ATGTGGTTCC AGATGAAGCT CAACCCGCAG CCGCCGGATC CGACGCAGCA GATGATCTTC
GCCTGGATGC CGGTGATCTT CACCTTCATG CTGGCGCACT TCCCGGCGGG TCTCGTGATC
TACTGGGCCT GGAACAACAC GCTCTCGGTG ATCCAGCAGG CCTACATCAT GCGCCGCAAC
GGCGTGAAGG TGGAGCTGTG GGACAATCTG AAATCCGCCG TCGTCAAACC AAAGAAGACG
GCCTGA
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| Protein sequence | MTDNRNTILA VILSGLVLLG WQYFFNIPQM EKQRAAQQAQ QQQEAAKQQT PPAATTPGAP
NAPAAPGAPG APANQPAANA PVVSRDAAIA ASPRIKVETP RLDGTLSLKG ARIDDLSLSQ
YHETVDPKSA PIHLFSPSGS ANPYYAEFGW VGAAGSNVKL PDQNTLWEQE GSGALTPANP
VTLKWDNGEG LTFRRQIAVD DRYLFTIKDD VTNVGGGPVT LYPFALISRH GTPHVEGFYI
LHEGLIGYLG EQGLQEYGYA KIDEAKTVGF KATNAWMGIT DKYWASALLP DTNAQLQARF
SSNQVGATRT YQTDYLEDAK TVPIGGTATA TARLFAGAKE ARVVGINFPF AGLGGYNQQL
GLNHFDLLID WGWFYFITKP MFLALDFFFH LVGNFGVAIL LVTVLVKLIF LPLANKSYAS
MAKMKAIQPQ LLALKERHPD DKAKQQQEMM EIYRKEKINP VAGCLPVLLQ IPVFFSLYKV
LFVTIEMRHA PFFGWIHDLS AADPTNLFNL FGLIPYDPST LPVIGSYLVL GVWPLVMGFT
MWFQMKLNPQ PPDPTQQMIF AWMPVIFTFM LAHFPAGLVI YWAWNNTLSV IQQAYIMRRN
GVKVELWDNL KSAVVKPKKT A
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