| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0028 |
|---|
| Symbol | |
|---|
| ID | 4020482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 35342 |
|---|
| End bp | 37240 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637960204 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_567169 |
|---|
| Protein GI | 91974510 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTCA TTAACCGATC AACCGCCGTC CGCCGGCCGT TGGCTTGCAG GGGCCCACTG
TGGACGGATG AGCCGGCTTA CGCACGCGCA AACCGGCTTG CCCTGATGAA CGGCATCAAT
TCGTTGGCCT CGTTCGGAGG CGAGATGAGA ATCCCGTATC GACAGATCAT TTGGGGTTGG
CGTAATGCCG AGATAGCCGC TCTCGCCGGC ATGGACCCGG CCAATCTCGG CGCTGTGACG
TTCCGCGTCG GTGACGACGA CCGGGTTCGC CTCGGCGACG AGGTGCTGCA CATCGATGAC
TGGTCGTATA ATGTTCTGCG GGTTTGCCCG GCTTGTCTTC GCAGCGATTT CGAGCGAGAG
AGCCGGTTTC CGGATTTGCT GCCTCACATC AGGTCGTGGT GGAATCTCGA TGCGATCGAG
GTGTGTCCGC TTCATCGGAC GCCATTGCTC GGCGGAAATC CGGATATCTT CGGCCACCGG
AACGATCCCA AGATTCTTGA CGTCCGCTTC GTTGCCGGTG TCGACTGTGA CCTGTCCAGT
TTGCAGGTCG AGGTCGGCAT CGTCGAGGAC GTTCGGGCGG AGAGCTATAT CTTGGGGCGT
TTGGGATTCA TGCCCCGGGT CAGATCTGAA ATTTTGGACG ACCTGCCGCT CTGGAATGCC
ATTCGCCTGA TGGACCGCTT TGGAGCGGTG GCCGCCGCCG GTGTCCGCGG CTTCACCTCG
CTGGGTGGCA GCGTCTCCAA GCGCGAGGCT CTGTCGGCCG GCTATGCGGT GTTCGCCGAC
GGCAAGGACG GCCTCTTCTG CCTGCTCGAC CGGCTCGTCG CCGACGCCGA CGTCGCTCGC
GGAAAATGGG GACCGCGGGT CGCCTACGGG CGGATTTACG AATGGCTTTC GCATGACACC
CGCGAAGAGG CCTACGACCC TGTCCGCGAG CTTGTGCGCC AGCATGCGAT CGACAATATC
CCGATGGCTG CCGGCGACCT GGTCTTTGAC CGACCGATCG GGGACCGCCA TGTCTTCACT
TTGTGGCATG TCAGCCGGGA GCTCAAGACG ACCCCATCGG CAACTCGGCG AATTTTGAAG
GCGATGGGGC ATCTCTCTCC GGACGACGAC GTCAAAGAGA ACTGGCAGGT GCTGCTTCGC
AAGCCGGTGG TCGACCAGGT GACAGCCGAC CTTGCGGACT GGCTCGGTTT CAACGAGGCT
CGCGCTTTGC TCGGCCTTCC CCGAGCGCCG ATGGACGCCT TGCTCCAATC TGGCGTCCTG
AAAGCGTTCC TCTCCGTCTC GACCGGCGTC GCCGAGCACA TATTCCGGAG GCGTGACCTC
GATGCGTTCA TGACCAGCTT GGTCGGCGGT GCGCCATTTT CCCGGAAGAC CGAGGGCCTT
TGCGATGTCG TTCAGGCGGG CCGGCGCAGC GGGACGTCGA CCACCGACGT CGTTGCCGCC
TTGCTGGCCG GCCGCCTGAC CTGCTGTGGC CGTCTCTCCT CGGCGACCGG TATGATGCAG
GTGCTGGTGG ACATCGAAGC CGTCAGGGCA CTGCGGGCGT CAGGCGAGGT GAGACGCCCC
GGGATGACCG TTGAGGACGC CAGGCGCAAG CTTGGCGTCA CTTGGCCAGT GGTCAGCAAC
CTGATCGGTC TCGGCTTGAT CAAGACGATC GAGACCCGGG CCGGACCTAA GAACCGGAAG
CAGTCTTTTA TTGAGGATAG CGAATTGGAG GCGTTCACCG CGGAGTTCGT ATCCGCAACC
GAAATCGCGG AAGCGCGTAA GACGCATGTG CGCGTGCTGG TACCGGCGCT CCGAAAGCAA
GGCATTGAGC CCGCGATCGA GAAGACCGCT GTAGGACAAT ATTTTTACAC GCGCGAGAAA
TTTACGCTGT CCAGGGCAGT CGTCGAGAGC GAACATTGA
|
|---|
| Protein sequence | MNVINRSTAV RRPLACRGPL WTDEPAYARA NRLALMNGIN SLASFGGEMR IPYRQIIWGW
RNAEIAALAG MDPANLGAVT FRVGDDDRVR LGDEVLHIDD WSYNVLRVCP ACLRSDFERE
SRFPDLLPHI RSWWNLDAIE VCPLHRTPLL GGNPDIFGHR NDPKILDVRF VAGVDCDLSS
LQVEVGIVED VRAESYILGR LGFMPRVRSE ILDDLPLWNA IRLMDRFGAV AAAGVRGFTS
LGGSVSKREA LSAGYAVFAD GKDGLFCLLD RLVADADVAR GKWGPRVAYG RIYEWLSHDT
REEAYDPVRE LVRQHAIDNI PMAAGDLVFD RPIGDRHVFT LWHVSRELKT TPSATRRILK
AMGHLSPDDD VKENWQVLLR KPVVDQVTAD LADWLGFNEA RALLGLPRAP MDALLQSGVL
KAFLSVSTGV AEHIFRRRDL DAFMTSLVGG APFSRKTEGL CDVVQAGRRS GTSTTDVVAA
LLAGRLTCCG RLSSATGMMQ VLVDIEAVRA LRASGEVRRP GMTVEDARRK LGVTWPVVSN
LIGLGLIKTI ETRAGPKNRK QSFIEDSELE AFTAEFVSAT EIAEARKTHV RVLVPALRKQ
GIEPAIEKTA VGQYFYTREK FTLSRAVVES EH
|
|---|
| |