| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbur_1281 |
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| Symbol | truD |
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| ID | 3998305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcoides burtonii DSM 6242 |
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| Kingdom | Archaea |
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| Replicon accession | NC_007955 |
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| Strand | + |
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| Start bp | 1369759 |
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| End bp | 1371078 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637959045 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_565950 |
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| Protein GI | 91773258 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAACG TTCCAAATGT AGAAAAACAG ATAGGAATTG ACCTATACAC AACTAAAACT
CCAGGCATTG GAGGCAAACT GCGCCAACAG ACCGAGGACT TCGGAGTAAT AGAGATTACG
AACAGGGAAG AAGGTACCGA AGGTAAATAT CTGATATTAG AACTTACAAA GCGTAACTGG
GAAACCCACC ACCTCATCAG GGACCTGACA CGAATATTAA GGATAAGCCA GAAACGTGTT
GGGTTTGCAG GTACCAAAGA TAAGAGAGCT GTGACCACAC AGAAGATCAG TATATATGAC
ATGGAAGAGG AAGCTCTGCA AAATGTCCAT CTTAAAGATA CCGAGTTAAA GATACTTGGC
CGATCAAATA AAAGTTTGGA ACTTGGAGAT CTCACCGGAA ATGAGTTCAT CATCACGGTA
AGAGATATTG ACCTTGATGA AAAGGAGCTT GAGAGCAGAC TTTCCCAGAC CACTGCGTCC
ATTAAAGAAC AAGGTGGCGT ACCTAACTTT TTCGGAATAC AGCGATTCGG AGCATTAAGG
CCCATTACCC ATGTGGTCGG AGAATCAATT GTAAGAAATG ATATTGAAAA AGCAGCAATG
GCATATATTG CAGCTTCATA CCCCGATGAA CCCGAAGATA CGCAGGAAGT ACGCAACCGC
GTGTTCGAAA CAAAGGACTA TATCGAAGGA CTGAAGGGAT ATCCCCTGCA ATTAAGGTAT
GAACGTGCCA TGATGCACCA CCTTGTATCC AAGCCTGAAG ACTATGCAGG TTCTTTTGAG
ACACTTCCAG CAAACATCAG GAAGATGTTT GTCCATGCTT ACCAGTCGTA CATATATAAC
ACAATAATAT GTAGCAGGAT AAAGAAAGGA TTACCTTTGA ACCGTGCTGT CGTGGGAGAT
ATCGTCTGTT TTAAGAACAA GGCGGGATTG CCGGACAAAT CTCGAAATGA AAGGGTCACT
GAAGACAATA TCGATGGCAT GAACAATCTT GTCAAAAGGA ACAGGGCCTT TGTTACAGCA
CCTCTTGTCG GATATAGCTC AGAACTTGCA TCTGGAGTTC CGGGAGAGAT AGAGAGAGAG
GTCATCGAGG AATTGAACGT ACCTATCGAA GGCTTTAAGG TACCTTCTAT GGAAGAGCTG
AGTTCAAAGG GATTAAGGAG AGAAATATTG CTATCAACTG ATCCGAAATA CTTCATCGAA
GAAGATGAGC TCAACGAAGG TAAGTACAGA GTGACACTTG ATTTCAGCTT GCCAAAGGGC
AGTTATGCTA CAACGATACT GAGAGAATAT ATGAAGGTCG AACCTTTAAA GATGAGCTGA
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| Protein sequence | MNNVPNVEKQ IGIDLYTTKT PGIGGKLRQQ TEDFGVIEIT NREEGTEGKY LILELTKRNW
ETHHLIRDLT RILRISQKRV GFAGTKDKRA VTTQKISIYD MEEEALQNVH LKDTELKILG
RSNKSLELGD LTGNEFIITV RDIDLDEKEL ESRLSQTTAS IKEQGGVPNF FGIQRFGALR
PITHVVGESI VRNDIEKAAM AYIAASYPDE PEDTQEVRNR VFETKDYIEG LKGYPLQLRY
ERAMMHHLVS KPEDYAGSFE TLPANIRKMF VHAYQSYIYN TIICSRIKKG LPLNRAVVGD
IVCFKNKAGL PDKSRNERVT EDNIDGMNNL VKRNRAFVTA PLVGYSSELA SGVPGEIERE
VIEELNVPIE GFKVPSMEEL SSKGLRREIL LSTDPKYFIE EDELNEGKYR VTLDFSLPKG
SYATTILREY MKVEPLKMS
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