| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3647 |
|---|
| Symbol | |
|---|
| ID | 4020204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 4366300 |
|---|
| End bp | 4367034 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637957708 |
|---|
| Product | flagellar basal-body rod FlgF |
|---|
| Protein accession | YP_564645 |
|---|
| Protein GI | 91794994 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG4787] Flagellar basal body rod protein |
|---|
| TIGRFAM ID | [TIGR02490] flagellar basal-body rod protein FlgF
[TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA TGCTGTACAC GGCGGCCAGC GGTGCGAGTC GCATTATGGA AGCGCAAAGC
ATAAGGGCTA ACAACTTAGC CAATGCGGAA ACCACAGGTT TTAAGGCTGA CTTAGAACGA
GTTAAATCCA TGGCTTTACC TGGGGTGGAA GCTTCGCTGA GCACTCGCGT ACTGGTGCAA
ACCCAGAGCA ATGGCTTTAG CCAGCAAAGC GGTGAGATGA ATCACACCGG CCGTAACCTT
GATATGGCAA TTCGTGATCG CGGCCTATTT ACTGTGATGG TGGATGGCGG CGAAGCTTAT
ACCCGCGCAG GGGCCATGAT AGCAGACGCC GAAGGGCAGC TTACCGTTAA TGGTCGTCCG
GTTCTGGGTA TCGATGGCCC TATGGTGCTG CCTGAGCATA AGGATTTATT CGTCGGTGAA
GATGGCACCA TCAGTGTGCT GCCGGCAGAA GGCGGGGTTA TTCAAGAAGT GGGCCGCCTG
AAAATGGTTA ATCCTGAACT TAATGAGTTA ACTAAAGGCG CCGATGGCCT GCTTTATCCT
ATCGCTGCAG GCGTGTTAGC CGCCGATGAT GGCGTACAGG TGGATAGCGG TTATTTAGAG
TCTAGTAATG TGCAGGCGGT GTCAGAGCTT ATTGCATCCA TGGATTTGAG CCGTCAATTT
GAAATCCAAG TGAAACTGAT GAAAAGCGCC GAAAAACTCG CAGAAGCGGG TAATCGCCTG
ATAAGAAATG CTTAA
|
|---|
| Protein sequence | MDKMLYTAAS GASRIMEAQS IRANNLANAE TTGFKADLER VKSMALPGVE ASLSTRVLVQ
TQSNGFSQQS GEMNHTGRNL DMAIRDRGLF TVMVDGGEAY TRAGAMIADA EGQLTVNGRP
VLGIDGPMVL PEHKDLFVGE DGTISVLPAE GGVIQEVGRL KMVNPELNEL TKGADGLLYP
IAAGVLAADD GVQVDSGYLE SSNVQAVSEL IASMDLSRQF EIQVKLMKSA EKLAEAGNRL
IRNA
|
|---|
| |