Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3605 |
Symbol | |
ID | 4020162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 4321930 |
End bp | 4324551 |
Gene Length | 2622 bp |
Protein Length | 873 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637957666 |
Product | ATP-binding region, ATPase-like protein |
Protein accession | YP_564603 |
Protein GI | 91794952 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCATT TTGCGGGGTC AATTCTTAAC AGAAACAGAG CAAGCTCCCT CATAGCAAGT GCCTTACTTG CCATATGCAT CTTATGTCTG GGACTTACCG TCATCACGGG TTGGTACCTG CAAAATATCA CCTTATTGCA AATTCACGAA TCATTTCCTC CTATGCAATA CAATACGGCG TTGGGTTTTG TATTATCTGG TAGTTGCTTG CTGTTGTCTT TATATGGCTA TGCCAGAATG GCGATGCTAG TTGGCGCTAT AGTGAGCCTA ATTGGTGGTC TTACCCTTAT CGAGATATAT TTTCAATTGG ATTTAGGGAT AGATCAGCTG CTTATGGAGC CCTACGTTAC CATATCAACG GCTTCGCCCG GTAGAATGGC ACCTAACAGC GCGCTATGCT TTCTCCTAAG TGGCATAGTG CTAGTACTGG TCAATGCCAA TGCTAGATTC AATGAGATGA CCTTATTAGG CACAGTGATC ATAGCCTTAG GCACTATTGC CTTACTGGGT TATGCCATGG GGTTAGAAAC GGCGTATGGC TGGGGTTATT TAACTAAGAT GGCTATTCAT ACTTCAGTAG GGTTTATCTT ATTAGGTTTA GGGCTGCTCT CTTGGGGCTA TAACATCTCC AGATTATCAG TCCACCATTT GCATATGAGA AACCTGCTGA CAGCGGGATT AACCCTTCTT GCCTTTACAC TGTTACTCTG GCAAGCATTG AATACTCAAA AAGACAATCA GATAGCCTCT AAACTTCAGC AGCAATTAGA AAACCATCAA GCGGCTTTAT CTCTGGCCTT GGACAAGCAC TTACAGTCAT TAGAACGAAT GGCTGTGCGT TGGGAGTCCA ATGGTGGTAC TTCTCAACAC GTCTGGGAAG CCGACGCCCA GACTTATATT CGCGACTTTC CTATTTTTCA GGCTATCGAG TGGGTGGATG AGTCCTTTAA TGCTAACTGG ATTGTGTCTC GCAGCAGTGA TGAAGAGGTA AAAGGATTAT TTATTGAGCA TGGGAGTGAA AGACACGGGC TACTCACACA GGCGCTAGCT CGTGATAGCA CGACCATCAT TTCTCCCGTG AAGCTAGTTC AGGGTGAATA TGGGCTGGTG GTCGTTAGGC CATTAGGTGT TGGCGGAGAA TTTAATGGCT TTATTTTAGC GATCATTAGT GTTCAAAAAT TACTCGACAG TGTGGTGCCG ACCTTGTCCA TCGCTGATGA TTTTCAATTT CAATTCAAAC TCTTCGACGG CGATACCTTA ATTGCAAGTA ACCCCAGTAA CCTAGCAGAA CATACTGTTC AGCTTAAGAA AAGCAGCGAG TTTTCTTTTA AAGAGAGCCT GTGGCGTACA GAACTTGCCT TGTTTAACGG GCCAAATACT CAATCAGGTT CACTGTGGGC CCATAGTAAT ATCGTACTCT CCATTAGTGC TGTCATTTCT GTTTTGATGC TGTTACTCAT GCATTTACGC TATCGTGAGC AAACAAGCAT CAAGCAGCTT GCGCAACAAA TTGAGCTGGC TGAAAAGGAA GAGCGGCTGA GAGTCACCTT AGAGAATATG TATGATGCCG TCATGTTGAT GGATAGTCAG GGAGGGGTGT TAAGTTTTAA TAAAGCCGCA GAACAGATCT TTGGCTATTC AACCGATGAC ATTATCGGCA AGAATATACG TACCCTAGTC GCTGAAATTG ACCATGGTGA GCCCAGGCAA AGCCTTGTCG ACAGTTTTTT GTCTCAAGAG GTTGGCACTA TAGGTCAAAG CTTTGAGACG TTAGGGCGCA GAGCCAATGG CGAACAATTT TTCATGACGA TAGCGGTTGT CGATATCACG CTCAATAACC AGCTGTTTTT CTCCGCCACA GTACGTGACA TTAGTTTGCG AAAAGCCACT GAAAGCAAAA TGAAGCAATA TATGCTTCAT CTAGAACGCA GTAATAAAGA GCTTGATGAT TTTGCTTATG TGGCCTCCCA CGACCTTAAA GCCCCGCTTC GCGGCATCAT GCAGCTCGCC AGTTGGATCC GAGAAGATGT TCAAGACAGT GCTAACACGC AAACATTAGA CTATTTAGCC TTGATGCAAA ATCGCATAAC TCGCTTAGAG AATCTGTTAA ATGACTTGCT TGCCTATTCT CGTATTGGTC GTAAGCATGG AGAGTTTAAA AGTATCAATG TCAGCGAAAT GGTGGCTGAG ACATTTAAGC TACTGAGCCC CCCAGTTAAT TTCACCTTGA ATTGCAGCGT AGATTTACCT GACTTTAATA CCTTATCGAC CCCTTTTGAA TTAGTCATGC GCAACTTGAT CAACAATGCG ATTAAGCACC ACGACTCGGA TTGTGGTGCT ATCACTGTAA CGGCAAAAAA TATGCGTGAA CACATTGAAT TCACGGTTAA GGATGATGGC CCAGGGATTG CGCCCGAGCA TCAGCAACGT ATTTTCGGGC TATTTCAAAC CTTAAAACCT CGAGATGAAG TTGAAGGAAG TGGGATGGGA TTGGCCATTA TTAAAAAAAT TATTGAACGC TATCATTGCA CTATCAATGT TGAATCTGAT GGTGTGCGCG GAACTCAATT TCAATTTACT TGGCCTAAAT ACAATTTATT AAGGAGTTAT TTAGATGAAT AA
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Protein sequence | MSHFAGSILN RNRASSLIAS ALLAICILCL GLTVITGWYL QNITLLQIHE SFPPMQYNTA LGFVLSGSCL LLSLYGYARM AMLVGAIVSL IGGLTLIEIY FQLDLGIDQL LMEPYVTIST ASPGRMAPNS ALCFLLSGIV LVLVNANARF NEMTLLGTVI IALGTIALLG YAMGLETAYG WGYLTKMAIH TSVGFILLGL GLLSWGYNIS RLSVHHLHMR NLLTAGLTLL AFTLLLWQAL NTQKDNQIAS KLQQQLENHQ AALSLALDKH LQSLERMAVR WESNGGTSQH VWEADAQTYI RDFPIFQAIE WVDESFNANW IVSRSSDEEV KGLFIEHGSE RHGLLTQALA RDSTTIISPV KLVQGEYGLV VVRPLGVGGE FNGFILAIIS VQKLLDSVVP TLSIADDFQF QFKLFDGDTL IASNPSNLAE HTVQLKKSSE FSFKESLWRT ELALFNGPNT QSGSLWAHSN IVLSISAVIS VLMLLLMHLR YREQTSIKQL AQQIELAEKE ERLRVTLENM YDAVMLMDSQ GGVLSFNKAA EQIFGYSTDD IIGKNIRTLV AEIDHGEPRQ SLVDSFLSQE VGTIGQSFET LGRRANGEQF FMTIAVVDIT LNNQLFFSAT VRDISLRKAT ESKMKQYMLH LERSNKELDD FAYVASHDLK APLRGIMQLA SWIREDVQDS ANTQTLDYLA LMQNRITRLE NLLNDLLAYS RIGRKHGEFK SINVSEMVAE TFKLLSPPVN FTLNCSVDLP DFNTLSTPFE LVMRNLINNA IKHHDSDCGA ITVTAKNMRE HIEFTVKDDG PGIAPEHQQR IFGLFQTLKP RDEVEGSGMG LAIIKKIIER YHCTINVESD GVRGTQFQFT WPKYNLLRSY LDE
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