| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3452 |
|---|
| Symbol | |
|---|
| ID | 4020006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 4130429 |
|---|
| End bp | 4131574 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637957510 |
|---|
| Product | aminotransferase, class V |
|---|
| Protein accession | YP_564450 |
|---|
| Protein GI | 91794799 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01814] kynureninase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.237823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAATGA CAGCTGAAAC TCAAATACGC TCATACAAAC AAGACTTCTG CTTACCCAAA
CACGGGGTTT ATCTGTTGAG CCATTCTGTG GGGCGGCCGC TTATCACTAG CCACGCCGCT
TTTGTGAATG ATTTTTTTAG CCCCTGGCAA GAGGGTAATA CTGAGCCCTG GGGTCAATGG
CTTGCCATTA TCACTGAGTT TCAACAGGCG CTAGCCACGC TTTTTAATCA TAAGCCCGAG
TGTTTCTGCC CTCAGGTGAA TCTATCTAGC GCCCTGTGCA AATTAGTGAT GTCACACCCT
AGACTTCGCG CGCCAAAGGC ACAAATTCTG ATGAGCGAGC AAGACTTCCC TAGCATGGGC
TTTGCTCTGA GTCGTGCTCT TCCCGATTGT GACATTCGCT TTATCCCACA AAAAGCTGAT
ATCACAGACA TAGCCACTTG GCAGCAATAT ATGCAGCCAA GTATCAGCCT CGTATTTATC
AGCCAAGTGT ACTCCAACAC AGGTCAGCAG GCCCCGGTGG CAGAGATAGT TGATCTCAGT
AAGCAGCTAG ATTGTTTAAG CTTGGTGGAT GTGGCTCAGT CCGCTGGCAT CATAAACCTA
GATTTACAGC AGCTTGATGT TGATTTTATG ATTGGCTCAG CGGTGAAATG GCTATGTGCA
GGACCCGGAG CGGCCTATTT ATGGGTGAAC CCTAAGCATT TAACCGATTG TGAACCTGTG
GATGTGGGCT GGTTTTCCCA TGAGAATCCC TTCGAATTTA ATATCCACGA TTTTCGCTAT
CACCCCAGTG CATTGAGATT TTGGGGCGGC ACCCCAAGCA TAGCCCCCTA TGCTCTAGCA
GCCCACAGCA TAGGCTATTT TAATCAACAG GCGCCCACTG TGCTGCAAGC CCATAATCAA
CACTTAGTCG ATAAGCTGAT CCAAGCTTTC CCTCAACAAT TGAACTCCCC AACAGATACA
GCTAAGCGCA GCGGCACTGT GATCCTCGAT TTCAAAGACA AACAAACCCA AATACTTAAT
GCTTTGAAAG CCGTCAATAT CGCCGTGGAT GCCAGATGCC TAGGGGTTAG AGTCTCGCCC
CACCTTTATA ATGACCTCAA GGATATTGAG CAATTTATTG ACCAGGTGAC TCAATCTCTG
TCTTAG
|
|---|
| Protein sequence | MIMTAETQIR SYKQDFCLPK HGVYLLSHSV GRPLITSHAA FVNDFFSPWQ EGNTEPWGQW
LAIITEFQQA LATLFNHKPE CFCPQVNLSS ALCKLVMSHP RLRAPKAQIL MSEQDFPSMG
FALSRALPDC DIRFIPQKAD ITDIATWQQY MQPSISLVFI SQVYSNTGQQ APVAEIVDLS
KQLDCLSLVD VAQSAGIINL DLQQLDVDFM IGSAVKWLCA GPGAAYLWVN PKHLTDCEPV
DVGWFSHENP FEFNIHDFRY HPSALRFWGG TPSIAPYALA AHSIGYFNQQ APTVLQAHNQ
HLVDKLIQAF PQQLNSPTDT AKRSGTVILD FKDKQTQILN ALKAVNIAVD ARCLGVRVSP
HLYNDLKDIE QFIDQVTQSL S
|
|---|
| |