| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3429 |
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| Symbol | |
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| ID | 4019977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4095162 |
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| End bp | 4096250 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637957481 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_564427 |
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| Protein GI | 91794776 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACTA CTATTCTCTC AATCCTGGTA CTGACCGCAT CCTTGAGCAG CTTAGCTAGT
GCCGCCGAGG CACCGCCGGC ACTGGTCAGC GTTAAACTCG TGGAAAACCG TCCCTTGTCG
CCTAAGGTCA TGGTGGTGGG ATCTATACAC TCTCGCAGTC AGGCCGAACT GACCTCGGGT
ATAGAAGGAC GTTTGGCATG GGTGCAAGAA CCCGGCATTC ACGTGTCGCA GGGCGACATA
GTCGCCAAGG TGGAGCAGAC ACAGTTGCTG TTACAGAAGG CCCAACAGGA GGCACAGATA
GAATACGAGA ATGTGGCGTT TATTCGCCTC GGGCGGGAAT TTGAGCGTTT GGTGAAATTG
AATGCCAGTA ACAGCGCTTC GGAAACCGAG CTTGATAAGG CACGCTCGGA CCGAGATTTG
GCCGCTGCCA GCCTAAAGCT GGCTCAGATC AAGCTTAAGA TGATCCTCGA CGACTTGGAC
CGCAGTGAGG TCAGGGCGCC CTTCGCAGGT ATCATCACAG CGCGACTGCA CCAGGCGGGC
GAGGATATAG GCCGCTCTGT GGTGATTGTA CAGATGACAG ATCCCGACGA TCTAGAGATC
CGCCTGTATG CGCCGCTGAA ATACAGTCGC CGAGTCAATG TGGGCGATGA GTTGAACATC
TATCACACCG AAGGTGAGTT CACTGCCAAG ATCCGCAGCC TGATCCCGGT ATCCGATATC
CGCTCCCAGA CCTTCGAGGC CCGTATTGAT CTGCCAGCGG ACATGCGCGA ACACTTCAGT
GTCGGCGAGC TTATCTCACT GGCGCTGCCC ATCGCTCCCA AGCAGTTGAC TACACTGGTA
CCTAGGGATG CGGTGATCCT GCGTTCTAGC GGTGCCTACG TGTTCAAGAT TGATGCCGAC
AACAAGGCCA TCAAGACCCA AGTCATTCTG GGCGATGGTG AAGGTGAGTG GATAGCCGTC
GAAGGCGAAC TGGCAGATGC CGATCCTGTG GTGGTTCGCG GCGCAGAGAC GCTGGAGGAT
GGCCAGCAGG TGACACTGAA AACCACCCAA GGCTTGGCCA GCGCGGCGAC CATAAGCGCG
GGCACATAG
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| Protein sequence | MKTTILSILV LTASLSSLAS AAEAPPALVS VKLVENRPLS PKVMVVGSIH SRSQAELTSG
IEGRLAWVQE PGIHVSQGDI VAKVEQTQLL LQKAQQEAQI EYENVAFIRL GREFERLVKL
NASNSASETE LDKARSDRDL AAASLKLAQI KLKMILDDLD RSEVRAPFAG IITARLHQAG
EDIGRSVVIV QMTDPDDLEI RLYAPLKYSR RVNVGDELNI YHTEGEFTAK IRSLIPVSDI
RSQTFEARID LPADMREHFS VGELISLALP IAPKQLTTLV PRDAVILRSS GAYVFKIDAD
NKAIKTQVIL GDGEGEWIAV EGELADADPV VVRGAETLED GQQVTLKTTQ GLASAATISA
GT
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