| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3417 |
|---|
| Symbol | |
|---|
| ID | 4019965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 4077749 |
|---|
| End bp | 4079056 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637957469 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_564415 |
|---|
| Protein GI | 91794764 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTTA CAGATAGTTT TTTGATTATT CTAGTGTTAA TTGGAATAAG TTGTTTCTTT
TCCATGTCAG AAATTGCCCT CGCGGCTTCC CGTAAAATTC GCCTGCAGCA GATGGCTGAT
GAAGGTGATA TCCGCGCCGA TAAAGTCCTT AAATTACAGT TGCATCCCGG CAGTTTTTTT
ACTGTGGTGC AAATCGGTCT TAATGCCGTG GCCATCATGG GCGGTATCGT GGGCGAAGCC
GCCTTCAGAC CGTATTTCTA CGACTTGCTC GCGCCTTGGC TTAGCCAAGA TTGGCTTGGG
CAAACCAGCT TTGTGATGTC ATTCGTGTTC GTTACCGCGC TGTTTATTCT GTTCGCCGAT
TTAATGCCTA AGCGAATTTC CATGGTGATC CCAGAACAAG TGGCGGTCAC TTTAGTGACG
CCCATCATCT TCTGTATCAC TTTTTTAAAA CCCTTAGTGT GGTTTTTCAA TGGCATGGCA
AATCTCATCT TCAAATTGTT ACAAGTGCCG ACGGCCCGTA ACGACCAAGT CACCCATGAT
GATATTTATG CCGTGATGAG TGCAGGCACA GAAGCTGGGG TGCTCGATAA GGGCGGCCAG
CAGATGATGG AGAATGTGTT TGAAATGCAG TCTGTATCTG TGACCTCAGC CATGACTGCC
CGCGAAAGTT TGGTTTACTT CTTAATGCAA GATAATGAAG AAGAGATCAA GCGTAAAATT
ACCGCCGATC CCCACAATAA ATTCCTCGTC TGTGATGGTC AGTTAGATAT GATCAAAGGC
TATGTGGATG CGAAAGAGCT GCTGCTGAAG GTGATTAATG GTGAGAAAAT CACCCTGATG
AATGATTCCT TAGTGCACAA CTGTTTAATT ATTCCTGATA CATTAAGTCT TTCAGAATCA
ATGGACTACT TTAAAAGTAA TCGAGCGGAC TTTGCCGTGG TGATGAACGA ATACGCCCTA
GTGGTAGGCA TAGTGACCAC CAATGACTTG CAAAGTGCGG TTATGGGCGC TTGGTCGCTG
CACGAAAGTG AAGAGCAAAT CGTCGCTAGG GATAATAATT CTTGGCTGGT AGACGGCGTG
ACCCCCATTA CCGATGTGAT GCGCGCCTTT GGCATTGAAG AATTCCCTCA GAATCAGAAC
TATGAAACTA TCGCCGGCTT TATGATGTAC ATGCTAAGAA AAATTCCTAA GCGTACTGAT
TTTGTTAACT TTGCCGGCTT TAAGTTTGAG GTGGTGGATA TCGACTCCTA CAAGGTGGAT
CAACTGCTGG TAACCCGTAT TACCGACGCC GAGCCGGAAG AAGAATAG
|
|---|
| Protein sequence | MSVTDSFLII LVLIGISCFF SMSEIALAAS RKIRLQQMAD EGDIRADKVL KLQLHPGSFF
TVVQIGLNAV AIMGGIVGEA AFRPYFYDLL APWLSQDWLG QTSFVMSFVF VTALFILFAD
LMPKRISMVI PEQVAVTLVT PIIFCITFLK PLVWFFNGMA NLIFKLLQVP TARNDQVTHD
DIYAVMSAGT EAGVLDKGGQ QMMENVFEMQ SVSVTSAMTA RESLVYFLMQ DNEEEIKRKI
TADPHNKFLV CDGQLDMIKG YVDAKELLLK VINGEKITLM NDSLVHNCLI IPDTLSLSES
MDYFKSNRAD FAVVMNEYAL VVGIVTTNDL QSAVMGAWSL HESEEQIVAR DNNSWLVDGV
TPITDVMRAF GIEEFPQNQN YETIAGFMMY MLRKIPKRTD FVNFAGFKFE VVDIDSYKVD
QLLVTRITDA EPEEE
|
|---|
| |