| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3384 |
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| Symbol | pdhR |
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| ID | 4019932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4038311 |
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| End bp | 4039063 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637957437 |
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| Product | transcriptional regulator PdhR |
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| Protein accession | YP_564383 |
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| Protein GI | 91794732 |
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| COG category | [K] Transcription |
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| COG ID | [COG2186] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTTATA GCAAGATTAC CCAGCCAAAG ATTTCTGATG TGATCATGGA GCAACTCGAA
CGTATGATCC TCGAGGGCAG CTTACAGCCA GGTCAGAAAC TCCCCCCAGA ACGAGAACTC
GCCGTGCAAT TTGAAGTGTC ACGGCCTTCT TTGCGTGAGG CTATTCAAAA ATTAGAGGCC
AAAGGCCTGC TAATGCGCCG TCAAGGTGGA GGCACTTATG TTAAGGAACA ACTGTGGCAG
AGTCTTGCCG ATCCCATCGT TGAGCTGATG CACAACGATT CGGAAAGTCA GTATGACTTA
CTGGAGTTTC GCCATGCCAC CGAAGGCATG ATGGCCTACT TTGCAGCGCT ACGTGGCAAC
GATGCCGATA TGCAAAATAT TCAAAATTGC ATTCTCGAAG TTGAAAAGGC CACAGAAATA
GAGGCCCAAG CGGATGCCAT AGTACGATTT TATCGCGCCG TCGCCGAGGC CTCACACAAT
GTGGCCATGT TGCATTTAGT ACTCAGTTTA ACTCCTGTGC TGCATAAAAA TGTGGCCCAG
AACCTGGAAC TTCTCAGCCG ACGCGAAGAA GCCTCCAAAA TGGCAAACGA ACACAGACGA
GCCTTGCTTG CTGCCATCGT TCGCCGTGAT CCTGACGCCG CCCGCGAAGC CTCTAATGAA
CATTTAAGTT ACATTGAAGA GATCATGCTG GCAGTGCGGG AAGAAGATAG TCGATTGCAG
CGTAGTCTGC GACGTTTAAA GAGCGGTGGA TAG
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| Protein sequence | MAYSKITQPK ISDVIMEQLE RMILEGSLQP GQKLPPEREL AVQFEVSRPS LREAIQKLEA
KGLLMRRQGG GTYVKEQLWQ SLADPIVELM HNDSESQYDL LEFRHATEGM MAYFAALRGN
DADMQNIQNC ILEVEKATEI EAQADAIVRF YRAVAEASHN VAMLHLVLSL TPVLHKNVAQ
NLELLSRREE ASKMANEHRR ALLAAIVRRD PDAAREASNE HLSYIEEIML AVREEDSRLQ
RSLRRLKSGG
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