| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3136 |
|---|
| Symbol | |
|---|
| ID | 4019662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3766529 |
|---|
| End bp | 3767965 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637957186 |
|---|
| Product | AAA ATPase, central region |
|---|
| Protein accession | YP_564135 |
|---|
| Protein GI | 91794484 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0464] ATPases of the AAA+ class |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAATG ATAACGTCAT AGCTTATAGA AAAGAGCGCC AGGATAGTGC AGCGCCACAG
AGATGTTCAC CCGCTAGCCA AAGCAATGCC GCTCTTTTAG GCGCCTACGC AACCTGGTGT
GAAGCTGTTA TTCAAACTCG TTTGCAGTTG CATTTTGATC AAGCGTGCCC CTTTACTGAT
GTATATGAGG TGCGACCTCC TGCGATAAGC GCTGAAGATG GCACGCTTGC GGCATTTGTT
CAGCAGCATG AACTCGACTT CTCATGCCAA TTGTTACTTA CCCTTGCCTT GATGCCTATT
GTTAAACCTC AGGTACTCGA TGTCTTACTG ATGAGAAACG ACAACATAGA ACGGCCCTAT
ACCGAGTTTG GCGGGGGCGA GCATCAAGGC GGGGTTGTGG CTAACGGGGA AACGCTGGCC
TTTTTGCTAG GGGGAGAGTC GATTGAAATA CGTCTTAAGG TGCAGCGTCT ATTGTCGGCG
ATACAATCCG GTGACATGCG CCAACTAACC GCTAGTGAAG CGGCCGTTAT TCAATTGTTT
GACGAGCCGG ATGAAATCAT AATAAACCCA TTGAAGTTAT TGCTTTTATT ATCCCCTAGG
CAGGTGAGTT ATTTTACTGT GGGAGGAGAG TACTCCACAC CTAAAGGGCG TGGTTTTCCG
GCACAGTTAG TGACGCCTAG CTATTCGTTT GACTCATTAG TGTTACCTAA CTCAGTCGTG
CGCCAACTCG ATGATATTTA TGCGTGGTCG CAATATGGAG ACAGGCTTAG AAATGAATGG
CAAATGGCCG AACGTATTCG CCCTGGGTAT CGAGCACTAT TTCATGGACC TTCGGGTACG
GGTAAAACCA TGACCGCCAG CGTCTTGGGT CAGCGATTGG GCAAGGAGGT ATATAAAGTG
GATTTGTCGA GGGTGCACTC TAAATACATA GGTGAAACCG AGAAAAATCT TGAGCGAGTG
TTTACATTGG CAGAGCACAA TCAATGGGTG CTATTTTTTG ATGAAGCCGA TGCGGTATTT
GGTAAACGTA CTCAAGCCAG CAATGCCAAT GATCAGTTTG CCAATCAAAA TGTGTCCTAT
TTATTGCAGC GAATTGAGCG CTTCGACGGG TTAGTGATCT TGGCCTCTAA CTATAAAGAC
AACCTTGACG ATGCCTTCTT TCGTCGCTTT GAATCTGTGA TTAACTTTCC CAAACCCGAG
GCAGAGCAAA GGTTGGCTAT CTGGCAAAAA GGCTTGTTGC CAGAGACGCA GCTCGCGGCA
GATGTTGATT TACAAGATAT CGCACTAAGA TGCAGCTTAT CAGGGGCGTC TATCATGAAT
GTGATCCGCT ATGTGTTGCT AAAAGCCATT GCAGAAAATC GCCCGCTTAT TAATCATAGC
GATCTTCAAG AGGGAATTAA TAGAGAGCAA GGAGGTAAAA CTCAGCCTCG TTGGTGA
|
|---|
| Protein sequence | MINDNVIAYR KERQDSAAPQ RCSPASQSNA ALLGAYATWC EAVIQTRLQL HFDQACPFTD
VYEVRPPAIS AEDGTLAAFV QQHELDFSCQ LLLTLALMPI VKPQVLDVLL MRNDNIERPY
TEFGGGEHQG GVVANGETLA FLLGGESIEI RLKVQRLLSA IQSGDMRQLT ASEAAVIQLF
DEPDEIIINP LKLLLLLSPR QVSYFTVGGE YSTPKGRGFP AQLVTPSYSF DSLVLPNSVV
RQLDDIYAWS QYGDRLRNEW QMAERIRPGY RALFHGPSGT GKTMTASVLG QRLGKEVYKV
DLSRVHSKYI GETEKNLERV FTLAEHNQWV LFFDEADAVF GKRTQASNAN DQFANQNVSY
LLQRIERFDG LVILASNYKD NLDDAFFRRF ESVINFPKPE AEQRLAIWQK GLLPETQLAA
DVDLQDIALR CSLSGASIMN VIRYVLLKAI AENRPLINHS DLQEGINREQ GGKTQPRW
|
|---|
| |