| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3099 |
|---|
| Symbol | |
|---|
| ID | 4019625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3725227 |
|---|
| End bp | 3726540 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637957150 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_564099 |
|---|
| Protein GI | 91794448 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0854983 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAT TTAGCCCACT GTTACTCCTC CCAGCCATGC TTCCATGCTT AGTGTTAGCC
ACAGAAGTCG ATATTGAGCA GCGCATACTC ACAATGGAAC AAGAGCTGCT GCAGCTCAAG
CAGGAACTCT CAGAGTCTAA GGCCAGACAA GCTGCCCAAG AAAAACAACA AGCGCAGTTC
CAACAAGCAC AATTGGCTCG AGTTGAGGCT GCTAAGGCTG AAGCTAAGCT TGAAGCTGAG
TCTGAACCTA AATCTGAACC CAGTGATGGC ATCAAAGTGG GGGGCGCTGT GCGATTTCAG
TATTCTTTCG AAGATTACAA CCAAGGTAAT CGAGACAGAG GCGGCGATTT TGATTTCGAT
GTGTTTCGCC TGGATCTCAA TGGAAAACTT GGTGATGTGC AGCTCTCGGC CCAATATCGC
TGGTTTCAAT ATATGCATGT TATACACCAT GCTTGGGTAG GTTATGACTT AACCCCAAGC
TGGCAAGTAC AAGCGGGGGT GACTCGCGTG CCCTTTGGCA ACTTGGACTA CAACTCTCAC
AATTTTTTCT TTTCAAGCAA CTATTATGTA GGCCTAGAAG ACGACTATGA TGCGGGCATC
AAGTTTATCG GTAAATGGGA TAACCACGAT CTGCGTCTCG GCTATTTCTT CACCGATGAG
ATGGGCGGTA TAGATGGTTA TGTCAACGAT CGCAGCGATC GCTACTCCTA TGATGTCGTT
GGTATTCGCC CCCCTAGTGA AGGCATATAT GACGGCATCA GTCAGGCTAT CGCCGAACAC
AATAGTATGG CAGCGCGTTA CAGTTACTTA TGGGGCAATA CTGAGCTTGG CGCATCGGCG
CAATATGGCG ACTTACGAGA CAGTAACGCC TCTGTCGGTC ATCGTCAGGC ATTTGCCGTC
CACAGCAAAA CCCAGATAGA CAGATGGAAC TTGCAACTTC AATACACACA TTATGAATAC
GCCCTAGACA ACGCCTTAAC TCGCCTTGCT GTGGGGGCTT ATCATTTTTT CGATACTATC
CCAAGTGAAG CCGAACTCAT TAACGCTAAC CTAGCCTATC AATTGCCCGT CAACTGGGGG
CCAATTACTA GCCTGACTTT CTATAACGAC TACAACTTGA TGTTTAATAA ATCGGGCAAT
TTAACTGAAG ATACTGTGAT GAATGTGCTC GGTGTTGCCG TCTCCGCTGG CGGACTTTAC
ACCTACATAG ATTTGGTCAG TGCCAAGAAT CACCCCTTTA TTGGCGGCAC CATGGCGGGT
GATGAAGATA ACTGGAATAC CCGAGTGAAT ATCAACTTTG GTTATTATTT CTAA
|
|---|
| Protein sequence | MKRFSPLLLL PAMLPCLVLA TEVDIEQRIL TMEQELLQLK QELSESKARQ AAQEKQQAQF
QQAQLARVEA AKAEAKLEAE SEPKSEPSDG IKVGGAVRFQ YSFEDYNQGN RDRGGDFDFD
VFRLDLNGKL GDVQLSAQYR WFQYMHVIHH AWVGYDLTPS WQVQAGVTRV PFGNLDYNSH
NFFFSSNYYV GLEDDYDAGI KFIGKWDNHD LRLGYFFTDE MGGIDGYVND RSDRYSYDVV
GIRPPSEGIY DGISQAIAEH NSMAARYSYL WGNTELGASA QYGDLRDSNA SVGHRQAFAV
HSKTQIDRWN LQLQYTHYEY ALDNALTRLA VGAYHFFDTI PSEAELINAN LAYQLPVNWG
PITSLTFYND YNLMFNKSGN LTEDTVMNVL GVAVSAGGLY TYIDLVSAKN HPFIGGTMAG
DEDNWNTRVN INFGYYF
|
|---|
| |