| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3000 |
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| Symbol | |
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| ID | 4019525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3601333 |
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| End bp | 3605574 |
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| Gene Length | 4242 bp |
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| Protein Length | 1413 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637957051 |
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| Product | hypothetical protein |
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| Protein accession | YP_564001 |
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| Protein GI | 91794350 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACTCTA ATGCCCTTAG CCGCACACAG GCACAGTCTC TCACCTTAGG TAGCCGTCAG
TGCGACAGGC TCAGCGATGC CTTGCTTGCC GGACATTTTG ATGTGGATGA AATGTCTTTT
GAAACCTTGT TGGTGCTGGC GAAACAGATA GCGGCTAAGT TGCACTTTTA TAATTTGGAT
AACCACAGGG ACGGCAGTTG GGAGCCCATG TTCCTTGGCA ATGAACTGGT GATTATCGCC
ATGTTGCAGA CGATTAATAC TCGTCGAAAA ACCATGGAGT TTGAAGAACA GCTCAAAGGG
GATATTGATC AGAGTATTGG CATCATTATC GAGATTTTTA GTCAGATAGA TGTGAGTTAC
CGCGCTTTAA AAACCTCAGA CAGTAAGGCG GCCCATGAGC TTTGCCTAAA AATATCCTCA
GTGATAGATA AGAAACTTCT TGAACAGTTA CAGGCGTTTA AATCAATTGC CGCCGGCGCC
AATTCAACCA ATAAGCCGCA GATGGCGCAG ATGGCGCAGT TTATCGCCTC TCTGGATCCA
CTCTGGGGGA TGGAGGCTCA ACAAGAGGAG GGGGGAAAGG AATTAAGTCC ACAGCTGCAA
GTCTCGACAC TGAGGCAATG TTTTACCACT TTGTTGAACG TGGTCCGTTT CTTACAAACT
GATATTCATA TTTATATTCA AGATCTTAAA AAACAATCGG ATCACGCCCC CGCCTTAGGG
CTACTCATGG CTTTTCTGAA ACTTTATCGC TTGAGTCAGC AAGAACTCAA TCGCTTTACC
ATGAAGCACT TAGATTTCTA CTACCAAAAA TTGCTTAAGT TTACCCCAGA ACAGCCTAAG
CCTGAGTCCT GCTATCTGGT GTTCAATCCC AGTAAGGGCC TAACCAAGCC CTGCGTACTG
CCTAAGGGCA CTGAGCTCAC CTGTGGTAAG AATGCTCAGC TTGAAGACAT CATCTTTGCC
TTAGATGAAG ATTTGCTACT GTCGAACATC AAGGTCAGTT CTGTCCTGAG TCTGTTTCTG
CACCGAGACC CGCTTATCTC CCCTGAGAGT GAACTGCATT ATGTGACCCA AGTGGTAAAG
AATCGACTCG ATTTGGACGC AAAATCTGTG ACTGAAGATC ATTTTCCCAC CTTCGGCGCC
AATTCGCTAT TGGGCAGTAA AAACCGTCAC CCCGCTGAGT TAGGTTTTGG CATTTCGGCG
CCCATCTTGA ACCTTAAAGA AGGCCGCAGG GATATTTCCT TGGTCATTGC GCTCACCGAA
TATCAACAAA TCAACGCCCA TTCCCTATAC CAACTGGTGA TGACGAATAA CCCGACTCAA
AAATTGCAGC TGTTGGCGGG GATTTTCAGC GAGTTATTAA GCAGTGAAGC CAGTAACGAA
CTGGCGAGTC TACAAGGGAG CGTCCAGCCT AAGGGCGATG GCCTTAATGC TTATACTCAA
TTATTCATAG ATACCCTTAA GCCTTGGCAG CGCAATGCCA TCTTTGGAGC AAGCGCTGCA
GGGGCACGGC AAGTCATCTA TAAGCATTAC CTGCTGACAT TACTTGAGCT TGCAACGTCT
GAGGCGCATT TTTATCGCAC CTTAGGGCGT ATTTTTAGCC GTCATACCTT GGCCTGCCTT
GAATGCTGTG GCCAAAAAGA CAGTGCGCCA GATGCAGATG GCAGCCAGCA ATTAAAACAA
TCCCAGCAAT TAAAAAAACC GGCCTGGTTA ACGCAGCTGG ATATTCATGT TATCGAGGAA
AAAGCTAAGC AATACAATGA AAGCTCAGGC TTAAGCCGTT TGCTGCGACT ACTCAAGCAA
GATCAGCTGC GCACCTTCTA TGAACTGTAT GAAACCATGT TTGAGATTAA AATTTCTACT
CAAGATGGCT GGCTTGAGAT AGGCAGTTAC CGTGTTAAAC CTTTGAACAA TAAAATCAAA
GGTGATGATT TAGGCCTGTA CGGATTTCAA TTTGATATTC CTCTCAGCGC AGATATCGCG
GCTATAGTGC CGTGCGATCC CGCTGTCCAT GGTGACAAGT GGCCAAGCGG CGAACCTTGC
ATTCAATTCT CAATTAAGCC TTTGTCGACC TTTTTCCCCT ATTCCATCTT TAGAAACCTC
ATCTTAAGTG CGGTCAACAT TGATGTGACG GTGAAAGGGG TGACAGAGCT TGTGGCTTAC
AATAATCATG GCCGTCTGGA TCCTTCCAAG ACATTTGTGC CCTTCGGCGC TCTGCCAACA
CTGCACAGCT ACCTTATTCT GGGCAGCGAA GAGATGGCCA TTAAACACAT TAAAGACATA
GAGATTAATA TCGATTGGGC GCAGTTGCCC ATGGGATTTG GTGGCTTTAG AGAACATTAT
CTAGGTTATA GCCATGGCTA TACAAATCAG AGCTTTAAAG CCAATATTCA AGTGCTTCGC
GACGGAAACT GGGTCAGTGG CTCACAGAAT AAACGCTTTA ACTTATTCGA TACTCAGGCA
AGTTCTGAAA AACCTCTGGC CCACAAATGC CTGTCAACCA GTGTGGTCAA TGAATTTAAA
CCCGTCACAA GAGGCCGCGC TGAGCTGGAG TTTGACTATA ACCTCAAGAG CCGTAATGGT
TTTATCAAGC TTGCCCTAAC GGCGCCGCAG CCAGCTTTTG GTCATCAAGA ATACCCAAGT
CTACTGACGC AGACTTTATT AACCAATGCC AAGTCAAAAC GCCCAGTGGC ACTGCCTAAT
GCGCCTTACA CTCCAACGAT AGATAAATTA TCACTCAATT ATCACGGCGA GACGGTCATT
TTTTTGCACC CTTTGAACCA GACAAAAAAC CTAGCCCACC ACAGTGTGAC CCATATTCAC
CCCTTTGGGT TTCAGCAAAT TTACCCCCTT AATGAATCGC GACGTCAAGG CGAGCAGCAA
ACCCTCTTTC CCCGTTATGG CTATGATGGC AATTTATTTA TTGGCTTAGT GGCAAGCGCC
TTGGCCGATG AAATTAGCCT GTTTTTTCAA TTCGATGAGA AAGCGAATTT AAATAGAAGC
GAGGGGGGGA GTGATATTCG CTGGAGTTAT TTGGTGGATA ACCATTGGCA TGCTTTCAGT
GAACGGCAGA TTATATCTGA CTCTACCTCA GGGTTTATCA CCTCTGGCAT AGTCACCCTC
AAGCTGCCCA ATACTATGAC AGCTAACAAC AGCGTTATGC CTTCGGGCCA GTATTGGATA
AGGGCATCGG CCAACCGAGA CTTGAGCTGC TATGGCCGCT GTTTATCGGT CTCGGCCCAT
GGGGCTAAGG TCACGCGGCA ACTGAGAAGT GATGAAAGCG GTGAAAGTTT AAAGGGGCTT
CAAAGCTGGA AGCCGATGCA GGCCATAGTG GGGCTTGGGC AAATCAGTCA GTTGACCCCA
AGCTTTGCAG GCAGAACCTT CGAAGGTGAG CGGAAATTTA AGCAGAGGGT GAATGAGCGT
TTAAGGCATA AGGGGCGCGC CGTCAGCCCT TGGGATTATG AGCGATTAAT TTTACAGGAA
TTCCCCGATG TTGATCGGGT CAAATGCTTT GCCAACCTTA AATATTGCAC CCAGGGAACT
TTCCCTGGGC ACATATTGAT CTTGGTGAGA TTAAATGTCC CCCATTGCGG TCATACGCCC
TGTGATAATT TTCATGCCAG CAGCGAGATG CTAAACCGCA TCCAGAAGTA TATTTCTGGC
CTATGTTCGG CGTTTGTGAA ACTTGATGTG CGCAATCCTA TTTATGAAAG CCTGCAGGTA
CGCTGTGCGG TGAAATTCAC TCAAGGGGAG CATCCTGGGT CTGCCATTTC TAAGCTTAAT
CAAGAACTGT GTGATTTTCT TTGCCCTTGG TCAGAGCGTG GCAATGGCGG CTTTGGCTGG
GCGTTGAAAA TCCAAGATAT CACGGCTTTT ATTCGCCATC GTCCTTATAT CAAGTTTGTG
ACTCAGGTTT CCGCCTTACA AATAGTGGCT GGAGAGCAAG GGGAGTTAGT GAATTATCGC
CTTATCGACA GCGTGAATGC TAAGGGGATG ACACCTGAGG CAAGCGCTAC TGAGCCCCTC
ATTCAGGGCA GTGCGCCTTG GTGCCTCTTG ATGCCATTTA GTCACCATGT CATTGACTTG
GTTGATGATG AGTATGAGCG GGTGGCTCGC GTCACTGGGG TGGATGAATT GGAGGTCGGT
GGTAACTTTA TTGTCAGCGA TGGGCCTAGT ATTTATGAAG AGCGTGATGA AGCGCGTGAT
GATGCGCGCC TAAATCAAAA AGGAAGTCAG CATAATGGCT AA
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| Protein sequence | MNSNALSRTQ AQSLTLGSRQ CDRLSDALLA GHFDVDEMSF ETLLVLAKQI AAKLHFYNLD
NHRDGSWEPM FLGNELVIIA MLQTINTRRK TMEFEEQLKG DIDQSIGIII EIFSQIDVSY
RALKTSDSKA AHELCLKISS VIDKKLLEQL QAFKSIAAGA NSTNKPQMAQ MAQFIASLDP
LWGMEAQQEE GGKELSPQLQ VSTLRQCFTT LLNVVRFLQT DIHIYIQDLK KQSDHAPALG
LLMAFLKLYR LSQQELNRFT MKHLDFYYQK LLKFTPEQPK PESCYLVFNP SKGLTKPCVL
PKGTELTCGK NAQLEDIIFA LDEDLLLSNI KVSSVLSLFL HRDPLISPES ELHYVTQVVK
NRLDLDAKSV TEDHFPTFGA NSLLGSKNRH PAELGFGISA PILNLKEGRR DISLVIALTE
YQQINAHSLY QLVMTNNPTQ KLQLLAGIFS ELLSSEASNE LASLQGSVQP KGDGLNAYTQ
LFIDTLKPWQ RNAIFGASAA GARQVIYKHY LLTLLELATS EAHFYRTLGR IFSRHTLACL
ECCGQKDSAP DADGSQQLKQ SQQLKKPAWL TQLDIHVIEE KAKQYNESSG LSRLLRLLKQ
DQLRTFYELY ETMFEIKIST QDGWLEIGSY RVKPLNNKIK GDDLGLYGFQ FDIPLSADIA
AIVPCDPAVH GDKWPSGEPC IQFSIKPLST FFPYSIFRNL ILSAVNIDVT VKGVTELVAY
NNHGRLDPSK TFVPFGALPT LHSYLILGSE EMAIKHIKDI EINIDWAQLP MGFGGFREHY
LGYSHGYTNQ SFKANIQVLR DGNWVSGSQN KRFNLFDTQA SSEKPLAHKC LSTSVVNEFK
PVTRGRAELE FDYNLKSRNG FIKLALTAPQ PAFGHQEYPS LLTQTLLTNA KSKRPVALPN
APYTPTIDKL SLNYHGETVI FLHPLNQTKN LAHHSVTHIH PFGFQQIYPL NESRRQGEQQ
TLFPRYGYDG NLFIGLVASA LADEISLFFQ FDEKANLNRS EGGSDIRWSY LVDNHWHAFS
ERQIISDSTS GFITSGIVTL KLPNTMTANN SVMPSGQYWI RASANRDLSC YGRCLSVSAH
GAKVTRQLRS DESGESLKGL QSWKPMQAIV GLGQISQLTP SFAGRTFEGE RKFKQRVNER
LRHKGRAVSP WDYERLILQE FPDVDRVKCF ANLKYCTQGT FPGHILILVR LNVPHCGHTP
CDNFHASSEM LNRIQKYISG LCSAFVKLDV RNPIYESLQV RCAVKFTQGE HPGSAISKLN
QELCDFLCPW SERGNGGFGW ALKIQDITAF IRHRPYIKFV TQVSALQIVA GEQGELVNYR
LIDSVNAKGM TPEASATEPL IQGSAPWCLL MPFSHHVIDL VDDEYERVAR VTGVDELEVG
GNFIVSDGPS IYEERDEARD DARLNQKGSQ HNG
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