| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2852 |
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| Symbol | |
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| ID | 4019372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3401722 |
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| End bp | 3402981 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637956899 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_563854 |
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| Protein GI | 91794203 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAACG ATACCCGTGG TCAAGATAGA CAAATTGCCC CAAATGCAGT GAAAAAACTT
AAACTCCCCT TGCTGCTGGG GGTATCCGCT GTACTGATGA GCGCCTTAGT GTGGGCAAGT
TTTTCTGGAG ATAAGGCGGC GACTTCAGTA GACGCCAGTG AGCTAAGGTT CGCAAGCTTA
ACTCGCGGCA CGTTAGTGCG TGATATCGCC ACCACAGGAA AAATTGTCGC CGCCAATGCA
CCCATTCTCT ATAGCACAGA GGAAGGGGTG GTGACCCTAT TAAGCCTGCC TGGGGATGAT
GTTGCCTTAG GTCAAGTGGT GGCCACCATA GAGAGCCCGA ACCTAGTGAG TCAGCTTAAG
CAGCAGCAAG CCTTGCATGA GGGAATGAAA AGCTCTCTTG AGCGGGCCAA GTTAGATGCA
AGGCGTCAAA CGCTCTTGGT TAGTCAGACA TTAGATATGG CCAGTGTCGA CCTTGATGCG
GCCGAGCGTG AGAGTCGCCG CGGCGATCAA CTCATCGAAG CCAAGCTCAT CAGCAAGATA
GATTTCGAGA AAGGCAAAGA CGATCTCCAT AAAGCCAAGC TCATCCATAA ACATGCCATT
GAAGAAGTTG AACTATTAAA GGATACCTTA AGTTTTGAAT TGCAAAACAG CGAGCTTGAA
GTCGATAGGC AGGCATTGGT GGTGGTAGAG CTTGAGCGTC AGCTGGACGC GCTACAAATT
AAGGCGCCAG TCGCAGGCAT CATAGGTAAT TGGTTAGTCG AGCAAAAAGC CCGCATCGCA
CCGAGTCAGC CATTGCTAAC CGTAGTGGAT TTAACTGCCT TTGAAGCTGA GCTTGCGGTG
CCAGAAGCCT ACGCCGATGA ATTAGGACTA GGCATGGACG TGGAGCTCAA GCTAGGTAAT
GTCACCCTAG TTGGCAAGCT GTCGTCCATC TCCCCAGAGG TGCGTGAGCG TGAAGTTTCT
GCCAGGGTGC GTTTTGAAAA TAGCGATAAG TTGGCGCTAC GTCAGAACCA ACGATTGTCA
GCACGGGTTT TATTGGAACA CCGTCCTGAT GTATTGATGG TGAAGCGTGG AGATTTTCTG
ACGCGAGGTG GCAACAGTGT TTACAAGTTG CAAGGTGAGC TTGCCCTGTT AACTGAGATT
GAGCTTGGGG CTCGCAGCAT GAGTCAAGTG GAAGTGTTAG CCGGCGGTGA GGAAGGCGAT
GTCTGGGTGA TAACAGGCAG TGAAGCCTTC AAACAGGCCG ACAAGGTTCA AATTAACTAA
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| Protein sequence | MINDTRGQDR QIAPNAVKKL KLPLLLGVSA VLMSALVWAS FSGDKAATSV DASELRFASL
TRGTLVRDIA TTGKIVAANA PILYSTEEGV VTLLSLPGDD VALGQVVATI ESPNLVSQLK
QQQALHEGMK SSLERAKLDA RRQTLLVSQT LDMASVDLDA AERESRRGDQ LIEAKLISKI
DFEKGKDDLH KAKLIHKHAI EEVELLKDTL SFELQNSELE VDRQALVVVE LERQLDALQI
KAPVAGIIGN WLVEQKARIA PSQPLLTVVD LTAFEAELAV PEAYADELGL GMDVELKLGN
VTLVGKLSSI SPEVREREVS ARVRFENSDK LALRQNQRLS ARVLLEHRPD VLMVKRGDFL
TRGGNSVYKL QGELALLTEI ELGARSMSQV EVLAGGEEGD VWVITGSEAF KQADKVQIN
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