| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2713 |
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| Symbol | |
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| ID | 4019232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3250200 |
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| End bp | 3250718 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637956759 |
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| Product | type IV pilus biogenesis protein, putative |
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| Protein accession | YP_563715 |
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| Protein GI | 91794064 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000625919 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAC GTCAAATTGG CTTTAGCTTA GTCGAATTAA TGGTTACCTT AGTGGTTGCC
ATGCTACTAG TAAGTGTAGG AGTCCCCTCA ATGAAGGCGC TCTATGAGGG AATACGAGTA
AACAATATTG TAGACACTAT AGAGTCCTCC TTTGTACTGG CTCGTAACCA AGCGATAAAT
TATGGTTCAA GAGTGTCTAT CTGCCCGTTA AAAGGCAGCA GTTGCAGCGG CGACTGGATT
GATGGATTCA GTGTATTTAT CGATAATGGT GTCCTAGGAA CTATAGATAC CACAGCCGGG
ATTACAGATA CCGTTATAAC TGTCGTTGGC GATTTTAATG ATAACGATTT TATTAAATCT
GATTTAGGTA TTTTCAGTTT TAATGCCGAT GGCTTAGTTG CTGTCTCTGG ACGAATAAGA
TATTGCCCAG GAAGTAAAAC TAATCCTGAC TCTAAAGCTG CAGAGATTGG CTCGGCCGGT
AAAGTCAAAT TAATAGAGAC AGGCATCAAC TGTAATTAA
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| Protein sequence | MKTRQIGFSL VELMVTLVVA MLLVSVGVPS MKALYEGIRV NNIVDTIESS FVLARNQAIN
YGSRVSICPL KGSSCSGDWI DGFSVFIDNG VLGTIDTTAG ITDTVITVVG DFNDNDFIKS
DLGIFSFNAD GLVAVSGRIR YCPGSKTNPD SKAAEIGSAG KVKLIETGIN CN
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