| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2709 |
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| Symbol | |
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| ID | 4019228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3246554 |
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| End bp | 3247597 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637956755 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_563711 |
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| Protein GI | 91794060 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00648208 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCCGCC TAATAAAGAG TCTTTTTTAT ATGAAAGCAA CTATTAATGA TGTCGCTAAA
TTTGCTGGCG TATCAATAAA AACAGTATCA CGGGTAACCA ACAAAGAACC TTCGGTTAAA
CAAACAACAA TAGACAAAGT TAACCAAGCG ATTGCCACGT TAAATTATCA ACCCAATCTT
GCTGCGCGAA ATTTAGCCAG CACTAGCTCA TATGTAATTG GGTTTATTTA TGACAATCCC
AATGCCTATT ATATTATTGA TATGCAAAAC GGTATTTTAT CTGCCTGTAA AGAGCGTGGA
TTCGAGCTGC TTATCCACCC TTGTAATGCA AAATCTGACA CTATCTGTGA AGAACTGACC
GCCATGGTGA AACATTCACG CTTAGCCGGT TTAGTGTTAA CCCCGCCTAT GTCTGAAAAT
CCCAATATTT TAGCTGCACT TGATAGTATC AAGGCTAATT ATGTGCGTAT TATTGCAGGT
GAAAACAATT CACAAAGTAA CGGCCTAACG GTTCTGGTAA ACGATAAGCA CGGCGCTGTA
GCAATAACTC AACATCTTAT TGATCTTGGC CATAGAAATA TTGCTTTTCT CAGTGGCGAT
CAGCAACATG AATCAACAAA AGAGCGCTTA CTAGGATTTA AACAGGCGTT AAATACCAAT
GCCATCGATG TGAATGAAGA ATGGATTTTG GATGGGAAAT ACGCTTTCGA GTCCGGTGTT
GATGGCGCGA ATAAATTATT TTCTATGGAA AACAAACCCT CAGCCATCGT TGCCTGTAAC
GATGAGATTG CAGCTGGCGC GCTATTTGCG GCAAGACTTG CAGGGTTAGA CATACCGGCA
GAATTGTCCA TTGTCGGCTT TGAGGACAGT CCGTTTTCTA GACAAACGTG GCCAAAACTA
ACTACTGTGC ACCAGCCCAA TATCGAAATA GCGCAAATAG CGACACAATT ATTAATTGAT
AAACGAAAAG CTCAGGGTAA CGAAACCTTC AAGGTCTTTA CCCCTAGCCC AGTCATCCGA
GATTCAACGT CGGCGCCAAT TTAA
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| Protein sequence | MIRLIKSLFY MKATINDVAK FAGVSIKTVS RVTNKEPSVK QTTIDKVNQA IATLNYQPNL
AARNLASTSS YVIGFIYDNP NAYYIIDMQN GILSACKERG FELLIHPCNA KSDTICEELT
AMVKHSRLAG LVLTPPMSEN PNILAALDSI KANYVRIIAG ENNSQSNGLT VLVNDKHGAV
AITQHLIDLG HRNIAFLSGD QQHESTKERL LGFKQALNTN AIDVNEEWIL DGKYAFESGV
DGANKLFSME NKPSAIVACN DEIAAGALFA ARLAGLDIPA ELSIVGFEDS PFSRQTWPKL
TTVHQPNIEI AQIATQLLID KRKAQGNETF KVFTPSPVIR DSTSAPI
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