| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2680 |
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| Symbol | |
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| ID | 4019197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3211623 |
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| End bp | 3212735 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637956724 |
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| Product | twitching motility protein |
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| Protein accession | YP_563682 |
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| Protein GI | 91794031 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.595329 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTTA TTCCTTTTTT AAAAGTCATG GTGGAGCGCA AAGCCTCGGA TCTCTTCATT
ACCGCAGGTT TTCCACCAAG CGCGAAAATC GATGGTGAAC TACGCCAATT AACCGAAGAA
AGCTTGAATC CGGCGCAGTC ACTGGCCTTT GTCGAAGCCT TGATGACGGA TGTACAGAAA
AAAGAGTTTC ACGACACCAG TGAGTGTAAC TTTGCCTTTG CAGAAAAAGA ATTAGGTCGA
TTTCGTGTTA GCGCCTTTTG GCAGCGAGAA TCTGCAGGCT GCGTGATGCG CCGCATCGAG
ACAAAAATCC CTGAGGTGGA TGACTTAAAA TTACCGCCAA TTTTAAAAGA TTTAGTCATG
AGTAAACGCG GCCTTATCAT CATGGTGGGC GGTACGGGTA CGGGTAAGTC GACATCACTT
GCAGCGTTAG TGGGCTATCG TAACGCCCAT TCAAGGGGGC ATATATTAAC CATCGAAGAT
CCGGTGGAAT TTGTCCACGA TCATAGACGC AGCATCATCA CCCAGCGAGA GGTGGGCATA
GATACAGAAT CTTTTGATGC GGCGCTTAAA AGCTCGCTCC GTCAAGCCCC TGATGTGATT
TTAATTGGTG AAATTCGCAG CCAAGAAACC ATGGAGTTTG CACTGTCGTT CGCTGAAACT
GGTCACCTGT GTATGGCAAC CTTGCACGCA AACAATGCCA ACCAGGCGCT CGATCGCATC
ATGCACTTGG TACCAGAAAG TAAGCATCAT CAATTGCTGT TCGATTTGTC ACTGAACCTA
AGGGGCATAG TAGCGCAGCA GTTAGTGGCA AAATCTGACG GTAGCGGACG TCGCGCCGCG
ATCGAAGTGC TGATCAACAC CCCTAGGGTG TCCAGCATTA TCGCGAAGAA TGAGCTGCAC
TTACTTAAAG AAACCATGGC AAAGTCAAAC GAGCAAGGCA TGCAGACCTT CGATCAGGCC
TTACTTAAAC TCTACGCCGA GGGTGAAATT AGTTATGCCG ATGCTTTACA CCATGCAGAT
TCTCCTAACG ATTTACGCTT GATGATTAAA CTGCAAAATA ATGAAACCGG TGGCAGTGGC
TTAATGGATG GTGTGACCTT AAATATGGAT TAA
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| Protein sequence | MDVIPFLKVM VERKASDLFI TAGFPPSAKI DGELRQLTEE SLNPAQSLAF VEALMTDVQK
KEFHDTSECN FAFAEKELGR FRVSAFWQRE SAGCVMRRIE TKIPEVDDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL AALVGYRNAH SRGHILTIED PVEFVHDHRR SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRSQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHH QLLFDLSLNL RGIVAQQLVA KSDGSGRRAA IEVLINTPRV SSIIAKNELH
LLKETMAKSN EQGMQTFDQA LLKLYAEGEI SYADALHHAD SPNDLRLMIK LQNNETGGSG
LMDGVTLNMD
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