| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2604 |
|---|
| Symbol | |
|---|
| ID | 4019121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3114385 |
|---|
| End bp | 3116469 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637956648 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_563606 |
|---|
| Protein GI | 91793955 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCATC AAATAAATGG GCTATCTTTT CAGCTTAATA TCATCGCGAT TGCCTTGTCA
GGACTGTTTT TATTAGGGTG TGGTTCAGGC AACCCCACAG TTGTTGACGA AGTTGAAGCA
ACACCTCCCA CAAGCATTAC GGGTTGGCAG ATGGTGTGGC AAGATGAATT TGACGGTACA
GAAGTCGATA GCAGTAAATG GAGTTTTGCA GTTGATTGTT TTGGTGGTGG TAATGATGAA
GCGCAGTGTT ATACCGCAAG ATCTGAAAAC TCGCAGGTGG CGGAAGGGCT ATTAACCATC
ACCGCCCTAA GAGAGACATT CTCAGGGCCT GCAGTGAATG ACTCTGATCC AAATTATGAT
CCTTTAGATA CGTCTAAAAC CTTGGACTAT ACCTCTGCAA GATTAGTCTC CAAAAACAAA
GGTGACTGGA AGTACGGTCG ATTTGAAATT CGCGCTAAGT TACCGCAAGG CCAGGGCACA
TGGCCTGCTA TTTGGATGTT ACCAACTGAC TGGGTGTATG GCCCTTGGGC GGGATCCGGT
GAAATAGATA TCATGGAAGC CGTTAACTTA ACAACGGTGA CCAATGGGGG CGAACCTGAA
TCAGCGGTTC ACGGCACATT ACATTTTGGC AAAACCTGGC CGAATAATGT TTACAGTGGT
CAAGATTACC ATTTACCAGA GGCACAAAAT CCCGCCGATG ATTTTCACGT TTACGCCCTA
GAATGGCAAG AAGATGAGAT CCGTTGGTAT GTCGATGATG TGCATTATGC TACCCAACGC
TCGTCTGGTT GGTACAGCCA ATACACTGAT GAAAATGGCG CTACCGCCAA TGCACCCGGT
GACGCACCTT TTAACCAACA ATTTCATATG TTGCTTAATC TTGCGGTAGG CGGGTCTTGG
GCGGCGAATG TCAATAACAC TGGCATTGAT GAAAGTGTGT TCCCACAGAC GATGCAAATT
GATTATGTGC GTGTGTATGA ATGTGCTGAC TCACCGAACA CAGGAGCTGG TTGCGCCGCT
ATTGATGATG CGGCGATTAT CGTGCCGGGT CATAGCGCAC CAGAGATTGT GATACCGGAT
ACACAATTTG GTCAAGGGCC CACTTTTAGC CTATTCAGTT ATGCCGATAC CATCGCACTC
AACACCAGTT TATCTTTTGG AAGTTATAAC CCAGATGGCG CGATAACCTA TCAAGTTGGT
AGTGATGATG TGCGCGGTGA GGTGCTTGAA ATCACCAAAA TAGCAACAAT AGGTAATGTA
TTTTTTGAAT ATTCTCCACG GGTTGATTTA TCCCATTGGC AAGCTCTGGG TGAGTTAGTG
TTTGATATCA ATATCGCCTC AATCACACAG GGAACAGAAG TGTTGGTTAA AGTCGACAGT
GGTTGGCCAA AAGTGGGTGA CATGAGTATT TCACTGCCGA CTAACCTCAA TGAATGGCAA
GAAGTCAGAG TGCCACTTGC CAGCCTTGTG GCCAGTGGTA ATCGCTTTTC ACCGGGTAGC
ACTGTCAATT TGGCCGATGT TGTTAATCCA TTTGTTATTG AACCTACTGG GCCAGTGGTA
TTCAAACTGG ATAATATTCG TTATGAATAT CAAGTGGCTC AGCAGACCGA GTTAGTGGTA
TATGATGATG CCGCTGTTGC TCCCTATGCT TTTGGTTTAT TTGCAGCATC TGGACAATTA
GTAGAGGAGC AAGTCGATGT GGGAGGCGAG CATAAAATAG TGACCCAATT AACCTTTAAT
ACCAATGAAG CTGTAGGGTT TTATCAAAGT AGCGGCACTG TGATGGATTT CAGCAGCTTT
AACTTCTTAT CATTCGATTT GAATGTGGTA ACAGATCCGC GTGAAGTGCG AAATATGAAG
ATTAAAATGG ACTGTCAAAC CCCCTGTAGT TCAGGAGATT TTGACATAAC CCCACCGGAT
ATCGGTGCGT GGACCCATTA TAATATTGCA TTAACTGATC TGGTGGCTAA CAAGGGTTCA
AGTTTAGATT TGACCAAAGT TGATACCCCG ATGGTTATTT TCCCGAAGTG GGGCGATCAA
CAAGGCGTCG TATTGCAAAT TGATAATATT AAGCTAATCA AATAG
|
|---|
| Protein sequence | MNHQINGLSF QLNIIAIALS GLFLLGCGSG NPTVVDEVEA TPPTSITGWQ MVWQDEFDGT
EVDSSKWSFA VDCFGGGNDE AQCYTARSEN SQVAEGLLTI TALRETFSGP AVNDSDPNYD
PLDTSKTLDY TSARLVSKNK GDWKYGRFEI RAKLPQGQGT WPAIWMLPTD WVYGPWAGSG
EIDIMEAVNL TTVTNGGEPE SAVHGTLHFG KTWPNNVYSG QDYHLPEAQN PADDFHVYAL
EWQEDEIRWY VDDVHYATQR SSGWYSQYTD ENGATANAPG DAPFNQQFHM LLNLAVGGSW
AANVNNTGID ESVFPQTMQI DYVRVYECAD SPNTGAGCAA IDDAAIIVPG HSAPEIVIPD
TQFGQGPTFS LFSYADTIAL NTSLSFGSYN PDGAITYQVG SDDVRGEVLE ITKIATIGNV
FFEYSPRVDL SHWQALGELV FDINIASITQ GTEVLVKVDS GWPKVGDMSI SLPTNLNEWQ
EVRVPLASLV ASGNRFSPGS TVNLADVVNP FVIEPTGPVV FKLDNIRYEY QVAQQTELVV
YDDAAVAPYA FGLFAASGQL VEEQVDVGGE HKIVTQLTFN TNEAVGFYQS SGTVMDFSSF
NFLSFDLNVV TDPREVRNMK IKMDCQTPCS SGDFDITPPD IGAWTHYNIA LTDLVANKGS
SLDLTKVDTP MVIFPKWGDQ QGVVLQIDNI KLIK
|
|---|
| |