Gene Sden_2604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2604 
Symbol 
ID4019121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3114385 
End bp3116469 
Gene Length2085 bp 
Protein Length694 aa 
Translation table11 
GC content45% 
IMG OID637956648 
Productglycoside hydrolase family protein 
Protein accessionYP_563606 
Protein GI91793955 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2273] Beta-glucanase/Beta-glucan synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCATC AAATAAATGG GCTATCTTTT CAGCTTAATA TCATCGCGAT TGCCTTGTCA 
GGACTGTTTT TATTAGGGTG TGGTTCAGGC AACCCCACAG TTGTTGACGA AGTTGAAGCA
ACACCTCCCA CAAGCATTAC GGGTTGGCAG ATGGTGTGGC AAGATGAATT TGACGGTACA
GAAGTCGATA GCAGTAAATG GAGTTTTGCA GTTGATTGTT TTGGTGGTGG TAATGATGAA
GCGCAGTGTT ATACCGCAAG ATCTGAAAAC TCGCAGGTGG CGGAAGGGCT ATTAACCATC
ACCGCCCTAA GAGAGACATT CTCAGGGCCT GCAGTGAATG ACTCTGATCC AAATTATGAT
CCTTTAGATA CGTCTAAAAC CTTGGACTAT ACCTCTGCAA GATTAGTCTC CAAAAACAAA
GGTGACTGGA AGTACGGTCG ATTTGAAATT CGCGCTAAGT TACCGCAAGG CCAGGGCACA
TGGCCTGCTA TTTGGATGTT ACCAACTGAC TGGGTGTATG GCCCTTGGGC GGGATCCGGT
GAAATAGATA TCATGGAAGC CGTTAACTTA ACAACGGTGA CCAATGGGGG CGAACCTGAA
TCAGCGGTTC ACGGCACATT ACATTTTGGC AAAACCTGGC CGAATAATGT TTACAGTGGT
CAAGATTACC ATTTACCAGA GGCACAAAAT CCCGCCGATG ATTTTCACGT TTACGCCCTA
GAATGGCAAG AAGATGAGAT CCGTTGGTAT GTCGATGATG TGCATTATGC TACCCAACGC
TCGTCTGGTT GGTACAGCCA ATACACTGAT GAAAATGGCG CTACCGCCAA TGCACCCGGT
GACGCACCTT TTAACCAACA ATTTCATATG TTGCTTAATC TTGCGGTAGG CGGGTCTTGG
GCGGCGAATG TCAATAACAC TGGCATTGAT GAAAGTGTGT TCCCACAGAC GATGCAAATT
GATTATGTGC GTGTGTATGA ATGTGCTGAC TCACCGAACA CAGGAGCTGG TTGCGCCGCT
ATTGATGATG CGGCGATTAT CGTGCCGGGT CATAGCGCAC CAGAGATTGT GATACCGGAT
ACACAATTTG GTCAAGGGCC CACTTTTAGC CTATTCAGTT ATGCCGATAC CATCGCACTC
AACACCAGTT TATCTTTTGG AAGTTATAAC CCAGATGGCG CGATAACCTA TCAAGTTGGT
AGTGATGATG TGCGCGGTGA GGTGCTTGAA ATCACCAAAA TAGCAACAAT AGGTAATGTA
TTTTTTGAAT ATTCTCCACG GGTTGATTTA TCCCATTGGC AAGCTCTGGG TGAGTTAGTG
TTTGATATCA ATATCGCCTC AATCACACAG GGAACAGAAG TGTTGGTTAA AGTCGACAGT
GGTTGGCCAA AAGTGGGTGA CATGAGTATT TCACTGCCGA CTAACCTCAA TGAATGGCAA
GAAGTCAGAG TGCCACTTGC CAGCCTTGTG GCCAGTGGTA ATCGCTTTTC ACCGGGTAGC
ACTGTCAATT TGGCCGATGT TGTTAATCCA TTTGTTATTG AACCTACTGG GCCAGTGGTA
TTCAAACTGG ATAATATTCG TTATGAATAT CAAGTGGCTC AGCAGACCGA GTTAGTGGTA
TATGATGATG CCGCTGTTGC TCCCTATGCT TTTGGTTTAT TTGCAGCATC TGGACAATTA
GTAGAGGAGC AAGTCGATGT GGGAGGCGAG CATAAAATAG TGACCCAATT AACCTTTAAT
ACCAATGAAG CTGTAGGGTT TTATCAAAGT AGCGGCACTG TGATGGATTT CAGCAGCTTT
AACTTCTTAT CATTCGATTT GAATGTGGTA ACAGATCCGC GTGAAGTGCG AAATATGAAG
ATTAAAATGG ACTGTCAAAC CCCCTGTAGT TCAGGAGATT TTGACATAAC CCCACCGGAT
ATCGGTGCGT GGACCCATTA TAATATTGCA TTAACTGATC TGGTGGCTAA CAAGGGTTCA
AGTTTAGATT TGACCAAAGT TGATACCCCG ATGGTTATTT TCCCGAAGTG GGGCGATCAA
CAAGGCGTCG TATTGCAAAT TGATAATATT AAGCTAATCA AATAG
 
Protein sequence
MNHQINGLSF QLNIIAIALS GLFLLGCGSG NPTVVDEVEA TPPTSITGWQ MVWQDEFDGT 
EVDSSKWSFA VDCFGGGNDE AQCYTARSEN SQVAEGLLTI TALRETFSGP AVNDSDPNYD
PLDTSKTLDY TSARLVSKNK GDWKYGRFEI RAKLPQGQGT WPAIWMLPTD WVYGPWAGSG
EIDIMEAVNL TTVTNGGEPE SAVHGTLHFG KTWPNNVYSG QDYHLPEAQN PADDFHVYAL
EWQEDEIRWY VDDVHYATQR SSGWYSQYTD ENGATANAPG DAPFNQQFHM LLNLAVGGSW
AANVNNTGID ESVFPQTMQI DYVRVYECAD SPNTGAGCAA IDDAAIIVPG HSAPEIVIPD
TQFGQGPTFS LFSYADTIAL NTSLSFGSYN PDGAITYQVG SDDVRGEVLE ITKIATIGNV
FFEYSPRVDL SHWQALGELV FDINIASITQ GTEVLVKVDS GWPKVGDMSI SLPTNLNEWQ
EVRVPLASLV ASGNRFSPGS TVNLADVVNP FVIEPTGPVV FKLDNIRYEY QVAQQTELVV
YDDAAVAPYA FGLFAASGQL VEEQVDVGGE HKIVTQLTFN TNEAVGFYQS SGTVMDFSSF
NFLSFDLNVV TDPREVRNMK IKMDCQTPCS SGDFDITPPD IGAWTHYNIA LTDLVANKGS
SLDLTKVDTP MVIFPKWGDQ QGVVLQIDNI KLIK