| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2555 |
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| Symbol | |
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| ID | 4019072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3055878 |
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| End bp | 3058088 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637956599 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_563557 |
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| Protein GI | 91793906 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00405398 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTAA ATCGACCCTT AGCAAATGCA ATCTGTTTTA TCATGCTGGC ATTATTGGCC
TTTTTACCTA GCCCTGCGTT TGCCTTAGTG CAGTATAATG AACAGCTTGA GGTGAACTTT
AGAGAACAGC CACATCAACT GTATCTGGAA CTCAATAAAA CCACAGGATC GCCTTTGGTC
TTTAATGGCC GCGCCGAATT TGAAGCCCTT GCTAAGGATC TTAGCTTTGA AGCGAATCAA
CTGCATCGCA GCATAGAAAT TCTTGCCAGA TTGAACCTGG AGTCAAGTGT AAAGAGTGAC
ACTAAGTTTG ACGATGTTAG TCTGTTAGTC ACCCAGCTTG AATCCATTGC GACAACGCCG
TTGGAAGAGT CTGTGGTGTT AATGCTCAAA GCAAGGCTTA TCGCAAAGGA GAAACATGAA
TTTACCCAAG CCGTTAATCT TTATAATCAG GCTTTAGCTA GAATTTCAGA CGAGCAAGAT
ATTGCCGCTA TTTTGTTTAA ATACACCCTA CACGAACACC TTAGTCAGCT GCACTATATG
TTACTTCAAG AAGTGCCTGC ACTGTCGCAC CTGAATCGGT ACCGTGCAAT TGCCTATCAA
CTAAGAAACG ATTACTTCAT TGCCCAAAGT GAATCCGCAC TGGGGCTGTA TTACAATAAA
AAGAAAGAGT TAGCTAAGTC ATTACAGCAT TATAGCGAAG CATTTAGCAT AGCAAACCGC
CTCGATTACC CCGTCATTAA AGCCAGTTTA CAATTCCAAC TGGCACGCAC ATATCGTGAT
TTGGAACAAT GGAGTGATGC GCTTAAGAAT GCTCATGCGG CAGTAACCAG CTTCCAAAAA
TTAGATCAGC AACCTAAAGT ATCAGAGGCA TTAACGGTAA TTGCCATGAT TTATGGCGCG
CAGGAAGAAT GGCACAAAGC CATAGATTAT TACTTCAATG CTCAACAAGT GAATGACAAA
TTAGGCAACT CAATTGGAGA GGCGCTTAAT TTTCACAATA TAGGTGAAGC CTATAAACAC
CTAAATAACC CAGTAGCTGC CGAAAAATAT ATGCAGTTAG CCAATGATAT ATTTAGGCAA
AAAAAGACGC TGCACTACTT GGTTTACAAT GAATTGCTTT TTGCTCAATG GGCTGTCGAA
CAACAAGAAT GGCAGAAGGC CGTACACCAC GGCAATGAAG CACTCATCAT AGCCAAAAAC
AAACAGCTTA TTGATGAGCA AATAGAAGCA TTAGGCTACC TGGCTCAAGC CCACGGTGAA
TTGAATGATT TTCCTGAAAC AATAAAAGCA CTGAAGACCC TGTTAGCGCT TATTGAGGCC
AAGCAGCCCG CATTGCAAGA GGATATGGCA AGCCTCAGTT TGACTGAACA GAAACTTAAG
TTTGAACTCA ATTTGTTACA GCTTAAAAAT AGCCAATATA TTCAACAAAA GCAGCAGAAT
CACCTGATTA TTTTTGCACT TATCGCCATA ATAACCTTGC TGCTACCCGC ACTCTATTCT
CTTTATAGAT ACAATCGCAA TTTAAGACGC AAAGTGAAGC AACAACGGCA GAGTTTGTCC
TTAGAGCCTG TGACTCAGCT AAAGGGCTAT CAAGGGCTGA TAAAACAGTT AACACAACAT
CATAAAGGGC TAGATCAACA CAGCCAGCCT CAAGTACAAC AAACCTTAGT CTTAGCTCGC
ATCGACTCCT TAGCTAACTG TGAGTTGCTA TTAGGTCAGT CTCAGGCAAA CAGTATGTTA
CACGCTCATG TGGACTATTT TGAGTCACAG ATGGCAACAC AAGTCTTTGT TATCCATAGT
GGTTTGCTTG GGTTTTATTT CGAGACTAAT GTCAATATTG CTGACGTCGC TGAAAAACTA
AAAAATTGCC TCACTGAACT TCACTTGAAT CAACGTATTT ACTTAGGTTT TAATAGCGCC
TCTAATTTTG ACAATACTGT TAACTTAGGC CATGTGAACT TACCCTTACA CCCTAACCCA
GATGTGCAAA TTAGCCCTGA ACTGGAATTC GAAACGGCAC AATTTGCGCT CGCCGCGGCA
CTGAGCATGG AAAAGAAAGA CAGTTATCTA AGTTTACGGG CGTTAAATTT TGCCCCTGCG
GCTATTTTCT TTAAACCCTT GTATTTAAAC CTTGCTCAGG CGATGCAAAG GGGGATGATA
CGGGCTGACA GTAATTATTC TATCAATGAA ATAGATTGGC CTACAAACTA G
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| Protein sequence | MTLNRPLANA ICFIMLALLA FLPSPAFALV QYNEQLEVNF REQPHQLYLE LNKTTGSPLV
FNGRAEFEAL AKDLSFEANQ LHRSIEILAR LNLESSVKSD TKFDDVSLLV TQLESIATTP
LEESVVLMLK ARLIAKEKHE FTQAVNLYNQ ALARISDEQD IAAILFKYTL HEHLSQLHYM
LLQEVPALSH LNRYRAIAYQ LRNDYFIAQS ESALGLYYNK KKELAKSLQH YSEAFSIANR
LDYPVIKASL QFQLARTYRD LEQWSDALKN AHAAVTSFQK LDQQPKVSEA LTVIAMIYGA
QEEWHKAIDY YFNAQQVNDK LGNSIGEALN FHNIGEAYKH LNNPVAAEKY MQLANDIFRQ
KKTLHYLVYN ELLFAQWAVE QQEWQKAVHH GNEALIIAKN KQLIDEQIEA LGYLAQAHGE
LNDFPETIKA LKTLLALIEA KQPALQEDMA SLSLTEQKLK FELNLLQLKN SQYIQQKQQN
HLIIFALIAI ITLLLPALYS LYRYNRNLRR KVKQQRQSLS LEPVTQLKGY QGLIKQLTQH
HKGLDQHSQP QVQQTLVLAR IDSLANCELL LGQSQANSML HAHVDYFESQ MATQVFVIHS
GLLGFYFETN VNIADVAEKL KNCLTELHLN QRIYLGFNSA SNFDNTVNLG HVNLPLHPNP
DVQISPELEF ETAQFALAAA LSMEKKDSYL SLRALNFAPA AIFFKPLYLN LAQAMQRGMI
RADSNYSINE IDWPTN
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