Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_2505 |
Symbol | |
ID | 4019008 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 2989291 |
End bp | 2993088 |
Gene Length | 3798 bp |
Protein Length | 1265 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637956536 |
Product | SMC protein-like protein |
Protein accession | YP_563508 |
Protein GI | 91793857 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0217131 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATCC TTAGCCTGCG CTTTAAAAAC ATTAACTCCC TTAAAGATGA GTGGAAAATT GATTTTACCC TGTCGCCATT CAAAGAAAAT GGCTTGTTTG CCATCACGGG CCCCACGGGC AGCGGTAAAA CCACCATTTT AGATGCCATC TGTTTAGCCT TGTATCACAG AACGCCAAGA CTGAGTGTGA TTTCTAAATC CACCAATGAG CTGATGACCC GTGGTACAGG TAGCGCCTTA GCCGAAGTGG AGTTTGAAGT AAAAGGCAAG GCTTATCGCG CCTTTTGGAG TCAGCGCCGT TCTCGAGATC TTGCCGATGG CAACCTGCAA GATGCACAGG TTGAGCTTGC TGAACTCGAG TCTGGGGTGA TTCTTGCCAG TCAAATCAAA CAAAAAACAG AGTTGGTCGA GTCTATTACC GGGCTTGATT TTGCGCGATT CACCCGCTCT ATGCTGTTAT CTCAAGGGGA TTTTGCTGCC TTTTTAAATG CCAGTGCCAA CGAGCGAGCC GAGCTACTCG AAGAATTGAC CGGCACTGAG ATCTACAGCT TAATCTCGGA GCGGGTGCAT CTTGAGTTTG GCGAACAAAA ACATCGTCTT AACCTGCTAA AAGTGCAATT GGATAGCGTT AAGTTGTTAA GTGCAGAAGA GCGTGAAGCA AAGCTTGCTA GCGCTTTGGC GTTAAAAGAG ACTCTGGCAC AGAAACAGCA GCAGTTACTA GCCTTAGTTG ATTGCCTTAC ATGGTGTGAT GCCATGCAGG CACAAACGCA GCTGGTAGAG CAAAGCGAGC AGGGGCTTCA GGCTGCAGAA GAGGCCATTA GGGATGAAAA AAATCAGTTA CAACGCCTAG CAGACAGTGA ACCTGCGCAG GGATTAGCGC CATTGTTTGA GAGAAAACAG CAACTCAGCC AGCAGCATCA AGCCCTTGAT AAACAGGTCG CGGAGCTTGG GCAGCAATTA GTGAGCGCAC AGCAAACCCT AAAAGAGCTG AGTGAGCAGC AAAGCGCGGC GGCTACAGCA CTTATTGTTG AAAAACAGGC GCAGCAAGCC CTCCATCATT TAATAGACAC CCAGGTTCAG CCCTTAGAGC AAAAGCTGGC CCAGAGCCGA TTTAAATTAA CTCAGTGCCA ACAAGCCCTT GATAAATCTC GCACCACTGA GGATGAATTA AATCATGAGC TATCGGCGGT TCAAGCTCGC AAGCAGGATT TAACCCTTGA AATTAAAGAG CTTTCAACAT TGCTTAGTCA ATATCCCCAA GGGCAAGCCC TCGGTGAGCA GTTAAGCGGT TGGAAGACGC AAGTCGCGCA GTTAATTGAA CTTGAACAGC AGCGCGGTGA GCTTGATATT CAGCAAAGGC AGTTGCAGCA ATCCTCTACG CTGTGCAAAC AAAACCTTGA GACTAACCAG CAGCAATTAA CGCAAGCCCA GCAGGTACAA ATTAATGCCA GTCATTTGCT GGCAGCAACG ACAGCGCAGA TAAATGAATT GCTCAGTGGC CGTGAGATAC ATCAGCTGCA ACAAGAGTAT CAGCAGTGTC TCGATAGCCA GCATGGGCGC AGTGAGCTGG CAAAAACATT CGAGCAATAT CGCAAGTTGT ACGCCACTTG GCTTGAGTTA ACCCAAAAAG CGGCTGATGA CGCTTTGCAA ACGATTGAGT TAACCAGCGA GCTTGCTAAG GTGCGCCTGC AATGGCGTGA TAAAAATCAG CAAGTGAAAG ATGTCACAGG GCTTTTGTCT CAGGAGAAAC ACATTAGCTC TCTCGACGCT GAGCGGGCTA AATTGCAACC CGGCGAGCCT TGCGCCCTGT GTGGCTCAAT TGAGCACCCT TTAGTGAGTG AATATCAAGG CATCAATGTT TCTGACACTG AGCAGCGTCA GCAAAAGCTA CTACAAGAAT TAGAGCAATT AAAACTTGCA GGTGAGGGGC TTAATTTAGC GCTATCTAAG CTTGAGCTGT CTTGGGAGCA CACACAGCAG CAATTAACTC ACTGCATCAG CGAGCAACAA GAGTTACGTA ATCATTGGCA CGCTTTATTC GCACAACTTG GGCTTTCTCT AAATGAGTTT GCCCTGCCAG CACCGTGGCG TAGAGCAAGT GATGGTGATA AAGCAAGCAT CAATCCTGGA GTCAATGAAG CTGCCTATTT AGAGGCTCTT GAGAGTCAAT TACGATCTTT TATTGTTAAG GCAACTGAGG AACAACACAA GCTCAGTGAG TGCATAACTC AGCTTTCAGG TATGCAGAAC CAAGAGGCGA CTGAGCTTAA AGCGTTGCAG CAAGCAGAGG CTCAGGCTCA AAGGCTAGTC TCAGCGCGAG ACGTACTCAG CGCGGAGCAG TGCAATATCA CTCAGGGCAT TGAGGAGCAA ATTCGCCGAA TTAACAGGCT TGAAGAGCAG CAACAGATGC TGATCCAAAA CCTAAACACT GAATGTGGCC AATTTGGCGT TACTTTACCA GCACGGGAGA GCAGCGCTTC TGAATATCAA CACTGGTTAA ATGAGCTCAG TGCTAATTTA CAACAGTGGC GCTTGGCGCA GCAGCAATTA ATCCTAAAAC AGCAACAGTT AGAGGTTTTA CAGCAAAGTA GCAGCAGTAT TTCCCAGCAG CTTAATAAGA ACCGCACTCA AATTGAGACT GATAAGCAGC AGTTGATGAC CATAGAAGCT GAACTTAAGG CGCTGAATGC CGAGCGGTTT GACTGCTTTG GTGACAAAGA TATAGAGCAT GAAAAAGACC AAGCAGAAAT TAACAAACAG CAAGCCGAAA ACGTAAATGC AGCACTTGTC AGCAAGCAGC TGGAAGCCAG TACGCTAGAA AACACCATCA AGACGCGTTT AGATAGCTTG AATGAACAGC TCACTCACCT TGTGACAAGC TTAACTGAGC ATCAACAACA TTGGCAAAAT GCCTTAGATG CTAGCCCGTT TAGTGATGAA GCAAGCTTTA GCGCCGCTTG TTTAAGTCAG GCGGACAGGC AAGCTCTGCA GACGCTGAAA AATGAGCTTG ATACTCGCTT GCATCAACAG CAAGCTCTGG CGCAACAAGC CAAGCTTGGG CTGGAAAAGT TACAACAACG AGGGCTGGCG GCAGAGTATC AGCTGTCATT GGCGCCAGCT CTTCGTATAG AGCATGGCGA GCTTGAGCAA TTGCAGCAGC AATTGACACA GGAGTTGTGG CAGATAGAAC GCGTTTTAAC AGAGGATAGC GAGCAACAAG CGGCGCAAGG CTCCTTGGTG AGTCAGCTTG AGGCTGCGAA ACAGTCCTAT GATGATATGG CGTATTTGCA TGCCCTTATT GGCTCGCAAA AGGGCGATAA ATTCCGTAAG TTCGCCCAAG GGCTCACACT CGATCACCTT GTGGCACTGG CTAACCGACA GCTTGGGCGT TTGCATGGGC GCTATTTATT AGAGCGCAAA GGCAGTGATG CCTTGGAATT ACAAGTGATT GATACCTGGC AAGGGGATGC GCTAAGGGAT ACCCGTACGC TTTCAGGGGG AGAGAGCTTT TTGGTGAGTT TAGCCTTGGC CTTAGCGTTA TCAGATCTGG TCAGTCATAA AACCAGTATT GACTCACTCT TTTTAGATGA AGGCTTTGGT ACCTTAGACA GTGAAACCTT AGACATGGCC CTCGATGCCT TAGATAACTT GAATGCCTCA GGTAAGATGA TTGGGGTGAT AAGCCATATC GAAGCCATGA AGGAACGCAT TGATGTACAG ATAAAAGTAA ATAAAATGAA TGGCCTAGGT ATTAGTCGAT TACAGAGTCA ATACCAATAT CAAGCAGTTT TAGAATGA
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Protein sequence | MKILSLRFKN INSLKDEWKI DFTLSPFKEN GLFAITGPTG SGKTTILDAI CLALYHRTPR LSVISKSTNE LMTRGTGSAL AEVEFEVKGK AYRAFWSQRR SRDLADGNLQ DAQVELAELE SGVILASQIK QKTELVESIT GLDFARFTRS MLLSQGDFAA FLNASANERA ELLEELTGTE IYSLISERVH LEFGEQKHRL NLLKVQLDSV KLLSAEEREA KLASALALKE TLAQKQQQLL ALVDCLTWCD AMQAQTQLVE QSEQGLQAAE EAIRDEKNQL QRLADSEPAQ GLAPLFERKQ QLSQQHQALD KQVAELGQQL VSAQQTLKEL SEQQSAAATA LIVEKQAQQA LHHLIDTQVQ PLEQKLAQSR FKLTQCQQAL DKSRTTEDEL NHELSAVQAR KQDLTLEIKE LSTLLSQYPQ GQALGEQLSG WKTQVAQLIE LEQQRGELDI QQRQLQQSST LCKQNLETNQ QQLTQAQQVQ INASHLLAAT TAQINELLSG REIHQLQQEY QQCLDSQHGR SELAKTFEQY RKLYATWLEL TQKAADDALQ TIELTSELAK VRLQWRDKNQ QVKDVTGLLS QEKHISSLDA ERAKLQPGEP CALCGSIEHP LVSEYQGINV SDTEQRQQKL LQELEQLKLA GEGLNLALSK LELSWEHTQQ QLTHCISEQQ ELRNHWHALF AQLGLSLNEF ALPAPWRRAS DGDKASINPG VNEAAYLEAL ESQLRSFIVK ATEEQHKLSE CITQLSGMQN QEATELKALQ QAEAQAQRLV SARDVLSAEQ CNITQGIEEQ IRRINRLEEQ QQMLIQNLNT ECGQFGVTLP ARESSASEYQ HWLNELSANL QQWRLAQQQL ILKQQQLEVL QQSSSSISQQ LNKNRTQIET DKQQLMTIEA ELKALNAERF DCFGDKDIEH EKDQAEINKQ QAENVNAALV SKQLEASTLE NTIKTRLDSL NEQLTHLVTS LTEHQQHWQN ALDASPFSDE ASFSAACLSQ ADRQALQTLK NELDTRLHQQ QALAQQAKLG LEKLQQRGLA AEYQLSLAPA LRIEHGELEQ LQQQLTQELW QIERVLTEDS EQQAAQGSLV SQLEAAKQSY DDMAYLHALI GSQKGDKFRK FAQGLTLDHL VALANRQLGR LHGRYLLERK GSDALELQVI DTWQGDALRD TRTLSGGESF LVSLALALAL SDLVSHKTSI DSLFLDEGFG TLDSETLDMA LDALDNLNAS GKMIGVISHI EAMKERIDVQ IKVNKMNGLG ISRLQSQYQY QAVLE
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