| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2445 |
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| Symbol | |
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| ID | 4018944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2914576 |
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| End bp | 2916156 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637956472 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_563448 |
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| Protein GI | 91793797 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCACA CATTTTCTCG AAAATGGACT AACCCAGCTT ACCATCCACC AAGTCTTCCA
CAAACTGCTT CATATGTGTA CGAGTATGAT TGCTTACCAT GCATTGCGCC TTATTCTTTT
GACCCTCAAG TTAAAAACTG CACTAAGTAT TGCCCACCGT CAAAGCCATT ACTAAACCTT
GAAACAGGCC AATGTGAAGG AGAAGGGCCT AAACAGTGTG AGATGACAGC GGGGAATCCA
GTTGTCATCT CAACAGGAGA GAAAGTACAG CAAGAATTGC CTGATTTTGT AGGTAATAAA
CAGTTCCCAT TAAACTTTAA TAGGAACTAT CGCAGCTATA GAGCCCCTGA AGCTAATCCA
CAATTCAGTA TCCAATTTAA TCCACTTCCA GCCACATCAT TTAGCAATTG GAAACGTTAT
CTGCAGCCAG TGGGATACAC AGGGGTGGCG AGTAAATATA GTCACCTTAT TGCGAAACCT
TGGCGTGAAT ATACTGAAGA GGATGGCAGT GTGCGATATC AACCACCTGT AAGTGGCCAT
AGACAGTGGC GACACAGTTA TGATTATCGC ATGTATATCA CAGGCAATAG GGCCATTTTA
CATCGCCCTA CGGGAACCGA CCTTCAATTT ACTAAATCAG GGGCAGACTA CCTGTCCTCA
CAGGCAACTG GTAAACGTAT TTTGCAAGTG ATTAAAGACA ATGTACAAAC GGGCTGGCTT
TATGAGTTTA GCGGTGGGCT AAAAGAGCTA TATGATTTGA ACGGAAAATT GATTCAACTT
CAGAAAACAG AATCGCTTTA TCAGACACTT GCATATAACC AAATTGGTCA ACTTGTATCG
GTAGCTCACA GCTTTGGGGG CAGTATAGTA CTTAGCTATA ATCAGGATGG CCAGCTAACT
AGATTATCAT CAGAACTGGA TGGGGCTCAC GTTAACTATA GCTATGATCC CGTTGGTAAT
CTTATCAAGG TTGAACGGCA GCTAGAGAGC GTGCCAGGTA CTTTTATTAC GACAGAAACT
CGACAATATC ATTTTGAAGA CAGCCGTTAT CCGTATGCGT TAACGGGTAT CACCAATGAA
CAGGGCAATC GTTATGTTAA CTGGGAATAT GACAACATGG GCCGAGTTAT CGAAAATGTA
AAAGGCGATA ATCAGCAACT TGTTAGTTTT AATTATAATG GCGAACTCAG TACAACGGTG
ACAAACCCTT TAGGGAAAAG GACCACCTAT AACTTTAGTA ACAGCACTGG GGATAAACGT
TTTACTTTCA TCGAAGGTGA AGCATCGAAT AACTGCATGG CTGCAAATAA AAGTTATAGC
TATTACACGA CTGGAACTTC GAAGGGACTA GTTCACAAGC AAACGAATTG GAAAGGTGTA
ACAACTTTAT TTGCTTATAA TCCCAGAGGT TTGGAGATTA CACGTTATGA CTCCTTTGGC
ACTCCTGAGC AGAAGTTAAC CACCACTGAG TGGCATGCAA CTCATCCATG GCCGATAAAA
ATAACAGCAG GCAATGAAGT GAAAGAATAC CGATACGATG AGAGCGGGAA TGTCGTTTTA
CAAAGAAGAC AAAATAAATG A
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| Protein sequence | MRHTFSRKWT NPAYHPPSLP QTASYVYEYD CLPCIAPYSF DPQVKNCTKY CPPSKPLLNL
ETGQCEGEGP KQCEMTAGNP VVISTGEKVQ QELPDFVGNK QFPLNFNRNY RSYRAPEANP
QFSIQFNPLP ATSFSNWKRY LQPVGYTGVA SKYSHLIAKP WREYTEEDGS VRYQPPVSGH
RQWRHSYDYR MYITGNRAIL HRPTGTDLQF TKSGADYLSS QATGKRILQV IKDNVQTGWL
YEFSGGLKEL YDLNGKLIQL QKTESLYQTL AYNQIGQLVS VAHSFGGSIV LSYNQDGQLT
RLSSELDGAH VNYSYDPVGN LIKVERQLES VPGTFITTET RQYHFEDSRY PYALTGITNE
QGNRYVNWEY DNMGRVIENV KGDNQQLVSF NYNGELSTTV TNPLGKRTTY NFSNSTGDKR
FTFIEGEASN NCMAANKSYS YYTTGTSKGL VHKQTNWKGV TTLFAYNPRG LEITRYDSFG
TPEQKLTTTE WHATHPWPIK ITAGNEVKEY RYDESGNVVL QRRQNK
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