| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2406 |
|---|
| Symbol | |
|---|
| ID | 4018904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2863542 |
|---|
| End bp | 2865824 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956433 |
|---|
| Product | formate acetyltransferase |
|---|
| Protein accession | YP_563409 |
|---|
| Protein GI | 91793758 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1882] Pyruvate-formate lyase |
|---|
| TIGRFAM ID | [TIGR01255] formate acetyltransferase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACA ACACCACAGT ATTCGCCAAG GCATGGGAAG GTTTTAGTGC CGGCAATTGG
AAGACTCAAG TCAATGTCCG CGACTTCATA CAGCAAAACT ACACTCCCTA TGAAGGCAAT
GATGAATTTT TAGCCGATGC TACCGAGGCC ACCACCCAGT TATGGGACCA GGTCATGGAA
GGCATTAAGC TTGAAAATTC AACCCATGCT CCGGTGGATT TTGATACCGA TAAGGTATCC
ACCATTACCT CCCATGCTGC GGGCTACATT AATCAAGATT TAGAGACCAT AGTCGGCTTG
CAAACCGAAG CGCCACTTAA ACGTGCCATG CTACCTAATG GCGGCATTCG CATGGTTGAA
AGCTCATGCA AAGCCTATGG CCGTGAGCTC AATACTGATA TCAACTATAT CTATTCCGAA
CTTCGCAAAA CCCACAATCA GGGAGTATTC GATGTCTACA CCCCTGAAAT CATGGCCTGT
CGGAAATCCG GGGTATTAAC CGGTCTACCC GATGCTTATG GCCGTGGTCG TATTATTGGT
GATTACCGCC GTATCGCGCT TTACGGTATC GACTACTTGA TGCAAGACAA GCTCGGCCAA
TTCACCTCCT TACAAGCACA GTTTGAAGCA GGTGAAGACT TATCTGCAGT GATTCAATTA
AGGGAAGAAA TCTCTGAGCA GTACCGTGCG CTTGCACAAA TGAAGCAGAT GGCAAGCACT
TACGGTTTCG ATATTTCAGT GCCAGCGGTA ACCGCGCAAC AGGCCATTCA GTGGACCTAT
TTCGGTTATT TAGCTGCGGT TAAGAGCCAA AATGGTGCTG CCATGTCATT AGGGCGCACC
TCAAGTTTCC TCGATATTTT CATCGAGCGC GATCTTAAAA ACGGCATCAT TACAGAGCAA
CAAGCTCAAG AAATGCTTGA TCATTTCGTG ATGAAACTGC GTATGGTGCG CTTCTTACGC
ACCCCTGAAT ACGATGAGCT ATTCTCTGGC GATCCAATTT GGGCAACCGA ATCAATCGGC
GGCATGGGAC TTGATGGCCG AACCCTTGTG ACCAAATCAA GCTTTCGTTT CCTGCATAGC
TTGTACAACA TGGGCCCAAG CCCTGAGCCA AACATCACCG TACTTTGGTC GAAAAAACTG
CCACAGGCTT TCAAAAACTA TTGCGCTAAG GTGTCGATTG ACACTAGCTC AATTCAATAT
GAAAACGATG ATCTCATGCG TCCTGATTTC GACTCAGATG ATTATGCTAT CGCCTGCTGT
GTAAGCCCTA TGATAGTGGG TAAACATATG CAATTTTTCG GCGCGCGAGC AAACTTAGCC
AAGACCATGC TATATGCCAT TAACGGCGGC GTGGATGAAA AACTTAACAT TCAAGTGGCG
CCAAAAACGG CACCTATCTC AACAGATGTG CTCGATTTCG ATGATGTGAT GACCCGCTTA
GACAACTTAA TGGAGTGGTT AGCCACTCAA TATGTCACAG CACTGAACTC AATCCACTAC
ATGCACGATA AATACGCTTA TGAAGCGGCA TTAATGGCAC TTCACGACAG GGATGTGCGC
CGCACCATGG CATGCGGTAT CGCAGGTTTG TCCATCGCAG CTGACTCCTT ATCGGCTATA
AAATATGCCC AAGTGAAGCC CATTCGTGAT GAGAACGGCA TCGCCATCGA TTTTGATATT
CAAGGGGATT ATCCAAAATT TGGTAATAAC GATGCCAGAG TCGATGACAT AGCGTGTGAC
TTAGTTGAAC GTTTTATGGC GAAAATTCGT GATAAGAAAA TGTATCGCAA TGCCATACCA
ACCCAGTCAA TTTTAACCAT CACCTCAAAC GTCGTTTATG GTAAAAAAAC CGGCAATACG
CCAGATGGTC GCCGCTCAGG CGCGCCTTTT GCCCCAGGGG CGAACCCTAT GCATGGCCGA
GATGAGAATG GAGCCATTGC CTCACTAACA TCGGTTGCAA AACTGCCTTT TGCTCACGCT
CAAGATGGTA TTTCTTATAC CTTCTCAATC GTACCCAATG CCTTAGGAAA AGATGATGCT
GGCCGCAGTG TCAACTTAGC CGCCTTGATG GATGGCTACT TTAGCAGTGG CCCCAGTCGT
GAAGGTGGGC AACACTTAAA CGTCAATGTG ATGAACCGAG AAATGCTAGT CGATGCTATT
GCTCATCCTG ACAAGTACCC TCAGCTTACC ATTCGCGTGT CTGGCTATGC GGTGAGGTTT
AATTCATTAA CCACAGAGCA GCAACAAGAT GTAGTCACTC GAACCTTCAC CCAAGGCTTG
TAG
|
|---|
| Protein sequence | MTDNTTVFAK AWEGFSAGNW KTQVNVRDFI QQNYTPYEGN DEFLADATEA TTQLWDQVME
GIKLENSTHA PVDFDTDKVS TITSHAAGYI NQDLETIVGL QTEAPLKRAM LPNGGIRMVE
SSCKAYGREL NTDINYIYSE LRKTHNQGVF DVYTPEIMAC RKSGVLTGLP DAYGRGRIIG
DYRRIALYGI DYLMQDKLGQ FTSLQAQFEA GEDLSAVIQL REEISEQYRA LAQMKQMAST
YGFDISVPAV TAQQAIQWTY FGYLAAVKSQ NGAAMSLGRT SSFLDIFIER DLKNGIITEQ
QAQEMLDHFV MKLRMVRFLR TPEYDELFSG DPIWATESIG GMGLDGRTLV TKSSFRFLHS
LYNMGPSPEP NITVLWSKKL PQAFKNYCAK VSIDTSSIQY ENDDLMRPDF DSDDYAIACC
VSPMIVGKHM QFFGARANLA KTMLYAINGG VDEKLNIQVA PKTAPISTDV LDFDDVMTRL
DNLMEWLATQ YVTALNSIHY MHDKYAYEAA LMALHDRDVR RTMACGIAGL SIAADSLSAI
KYAQVKPIRD ENGIAIDFDI QGDYPKFGNN DARVDDIACD LVERFMAKIR DKKMYRNAIP
TQSILTITSN VVYGKKTGNT PDGRRSGAPF APGANPMHGR DENGAIASLT SVAKLPFAHA
QDGISYTFSI VPNALGKDDA GRSVNLAALM DGYFSSGPSR EGGQHLNVNV MNREMLVDAI
AHPDKYPQLT IRVSGYAVRF NSLTTEQQQD VVTRTFTQGL
|
|---|
| |