| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2230 |
|---|
| Symbol | |
|---|
| ID | 4018722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2651541 |
|---|
| End bp | 2652581 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956252 |
|---|
| Product | cation diffusion facilitator family transporter |
|---|
| Protein accession | YP_563233 |
|---|
| Protein GI | 91793582 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1230] Co/Zn/Cd efflux system component |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.968975 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACAA GTAAAGTTAA TCCAGCATCT ACTGCGCACA GTCATCATTA CCTTAGTGAA
ACCAAGGGAA AAGAGTCTAA GGTGCTAATC GTGTTTTTTA TTACCTTGGT CACCATGTTT
GCCGAGATTG GGGTTGGCAC TTGGTCAGGC TCCATGGCCT TGCTGGCCGA TGGTTGGCAT
ATGGGCACCC ATGCGGCAGC ATTTGCAATC ACCATGTTCG TCTACGCCTA TGCGAGAAAG
CACAGCCATA ACAGCTTGTT CAGTTTCGGC ACGGGCAAAG TGAATTATTT GGGAGGATTT
GCCAGTGCAG TGGCGCTGTT GATCGTGGCG TTATTGATGA TAGTAGAGTC CTTGCATCGT
TTATGGTCTC CAGAAAGCAT CGCCTTTGAT GAAGCCTTGG TGGTGGCCTT TATTGGTTTA
GGTGTGAACG TTATTTCTGT GTTTGTACTG CACGATGAGC ATCACCATCA TGCTGACGAA
CATCACGAAC ATCACGAACA TCACGAACAT CACGAACATC ACGAACATCA CGAACATCAC
GAACATCACC ATCATGCTGA CGAACATCAC GAACATCACG AACATCATGA ACATTCTCAC
CATGGGCATG AACACAAAGA TCACAATTTG TCGGCGGCAT ATTTTCACGT GCTCGCCGAT
ACCTTGACCT CTGTATTGGC GATTTTAGCC TTGTTTGCAG GGCGTTACTT TGGTTGGCTG
TGGATGGATG CCCTCATGGG GATTGTGGGG GCGGTGATCA TCAGTAAATG GGCCTTAGGC
TTAATTAAGC AAACCAGCAC AGTGCTGCTG GATAAAACCC AAGCTCCAGC TAGTGTCGCT
GCCTTGAAGC ATATTATCGA GCAGGACCCG GATATTAAGG TTGAAGACTT ACACCTTTGG
ACCCTGAGTG AAGGTCATAA TGCGGCTATT TTGTCCATTT GTTCTCACAG CGGGCAATAT
CATAACAGGA GGGAGCATTA TCAAAAACTG CTGGCTCATC ACTTGCCCAA GGTGTCACAT
ATCACGGTAG AGATGAATTA A
|
|---|
| Protein sequence | MNTSKVNPAS TAHSHHYLSE TKGKESKVLI VFFITLVTMF AEIGVGTWSG SMALLADGWH
MGTHAAAFAI TMFVYAYARK HSHNSLFSFG TGKVNYLGGF ASAVALLIVA LLMIVESLHR
LWSPESIAFD EALVVAFIGL GVNVISVFVL HDEHHHHADE HHEHHEHHEH HEHHEHHEHH
EHHHHADEHH EHHEHHEHSH HGHEHKDHNL SAAYFHVLAD TLTSVLAILA LFAGRYFGWL
WMDALMGIVG AVIISKWALG LIKQTSTVLL DKTQAPASVA ALKHIIEQDP DIKVEDLHLW
TLSEGHNAAI LSICSHSGQY HNRREHYQKL LAHHLPKVSH ITVEMN
|
|---|
| |