| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2171 |
|---|
| Symbol | |
|---|
| ID | 4018663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2571533 |
|---|
| End bp | 2572954 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637956195 |
|---|
| Product | peptidase S41 |
|---|
| Protein accession | YP_563176 |
|---|
| Protein GI | 91793525 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCA TATTGCTAGT TTTCTGCATG GTTATCTTAA GCGCCTGTTC TAACGGACAA
CCGCCAAAAT CAACATTAAT GGATATAGAC AATGATGACA CGAAAATAAA GTATCCACCC
GCAGGTGATT TAATTGCTGT TAAGGATTTA AAAAGTGACT TAGCTGAATT AAATGTTTTA
CTCGAATCAG TTCACCCAGA TCCAAGTTTT ACCATGAACT TACCTGAGGT TAAATTACAA
ATAAACACAC TTGCATCAGC AATTACAGCT CCAATGACAC ATCTTGAAGC ATGGAAGTAT
TTCTCTGTGT TGAACCCCTA CTTTAAAGAT GGCCATATGG TTATTTCTTA CCCTGAATTA
GTTAAAGAAC TAAACCATCA TATCAGTAAT GGGGGACGGG TTTTCCCCAT TAAAGTACGA
ATTGACAAAT CGCACCATAT CTATGTTACT GATGTTGAAA ATTCTGACAA GGGTATAAAG
TTAGGTGACA AAATAGTTGG CATTAATGGG ATTGATACAT CGGAAATCGT TAAAGAAATT
TTAAACAGAA TGCATGGCGA TACGGTTAGC AATCGCCTAG CACTAATCTC GGAAAGATTT
TCCAATATGT ATTGGTTACT TTATGGGGAT ACTGGTCATT ACCAAATTGA TGTTAGCGAC
AATAGTGAAC ACAATCGTTA CTCTGTTATT GGAAGTAATA AAAAAGTAGG AGATATTAAT
CTTGAAATTG GTGATTTTAT TAAACGTGAA ATATTAGATA ATGGTATTGG CTATTTACGT
GTTGACCGTT TCTACTATAC CCCTGAGCAG GAAAAATCCT ATTTCAAGTT TATGGAAGAA
TCATGGCAGG AATTTCATAA TGCCAATGTG CAAGATGTCA TTATTGATGT TCGCAATAAT
CCAGGGGGAA CAGATCATTA TTGGCAACAA GGAATAGCGC CCTATATCGC CAGAGAGCCA
TTCTCATTTT TATCAGCATT TAAAATTCGA CTGACAGAAA GTAACCTTAA AAAAGGACCT
ATCAATGGTG AATTAGGCTC CATGATTGAA GGGCCTTATA ACCCACTAGT TCCAATTAAA
GGCCATAGTA ACCTACGAAT ACCTGGAAAA GCTTATTTGC TTATGGGGTC TTTAAGTTAT
TCTTCAACAA TCTTGTTTTT GACTGCACTC CAAGATTCAA AACAGGCCGT GATTGCTGGT
CAGTCAAGTG GTGCAAGATC CTGTACTACG GGGAGAATTG AAACTTCTAG ATTATCCGGT
TCTAAATTAG AAATAACCTT GCCAACACTG ATTTTTATTC GACCATCTGG CAAAGAATCA
TGCCATCAAC CCATTAAGCC TGATATTTTT ATATTAGATA ACCCTTCAGA TCCTACTGAA
GCAGTGAAAA AATTAGCAAC ATCCATTATT AGTAAGCGAT AA
|
|---|
| Protein sequence | MKSILLVFCM VILSACSNGQ PPKSTLMDID NDDTKIKYPP AGDLIAVKDL KSDLAELNVL
LESVHPDPSF TMNLPEVKLQ INTLASAITA PMTHLEAWKY FSVLNPYFKD GHMVISYPEL
VKELNHHISN GGRVFPIKVR IDKSHHIYVT DVENSDKGIK LGDKIVGING IDTSEIVKEI
LNRMHGDTVS NRLALISERF SNMYWLLYGD TGHYQIDVSD NSEHNRYSVI GSNKKVGDIN
LEIGDFIKRE ILDNGIGYLR VDRFYYTPEQ EKSYFKFMEE SWQEFHNANV QDVIIDVRNN
PGGTDHYWQQ GIAPYIAREP FSFLSAFKIR LTESNLKKGP INGELGSMIE GPYNPLVPIK
GHSNLRIPGK AYLLMGSLSY SSTILFLTAL QDSKQAVIAG QSSGARSCTT GRIETSRLSG
SKLEITLPTL IFIRPSGKES CHQPIKPDIF ILDNPSDPTE AVKKLATSII SKR
|
|---|
| |