| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2157 |
|---|
| Symbol | |
|---|
| ID | 4018649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2553988 |
|---|
| End bp | 2555454 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637956181 |
|---|
| Product | MotA/TolQ/ExbB proton channel |
|---|
| Protein accession | YP_563162 |
|---|
| Protein GI | 91793511 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAGT TAAGCGTGAA TTCCCATCCT TTATTAAGAG TGTTGTTAAA GGGGTTGTTA
AGGGCGCCGT TAAGGTCATC TTTTAGTGCG TGCTTAATTC AAAATGTCAT CTCCTATTGT
AGGGTCGCAC TCGCCTCAAT ACTTAAAGGA TTAGTGCTGC TAGCTAGCCT TTATTTAGGC
GCCGTTAATA GCGCGACACT GGCAAGCGTT GAGTCAGAAA TATTAACTGA AATCAAGCAG
TCAAATCAGG CTTATCAGCG TCAGTTAAGG GCCATGACCA CTGAGCGTCA GGGCTTATTG
CAACAACTCG CCGAGCAAGA ACGAAAGCTT AAAACCCTCA GCACCAAAGC GGCCAGCATT
ACGCGCGGCC AAGATGAGCA GAGCATGAGT TTGGCAACCT TAGCGCAGCG ATTGCAATCG
TGGAAGCAGC AGCAAGACTA CCTTAAGCAT TTATTAAGCG GCATTTCATC AGCAAAAGCC
ATAGAAACGC CCCAGCAGCT CAGTGCTTAT TTGGCAGGTT TTGCCAAACC AAGCGAATTT
ATAAAGCAAG ATATCGCCTT AAGCAGTGGC GAGCTTATCT CAGGCGCCAT GCTAAGCCTT
GGCCCTATGC ATTGGTTTAT CAGTGATGAT GACGAGAAGG GCGGATTGCT GACTCAAGTC
GAGCAGCAGT GGCAGCTGGC ATTAAGTTTT GATGAGGCGC AGCTGGCACA ACTTAGCGCT
GTGAAAACGG ACCATCAAGG CGTACTGGCG ATTGACCCCA GTAATAATCG CAGTTTAGTG
TTGGCGCAAC ATCAAGAGTC GTTCGCGGAG CATTTAGGCA AGGGCGGCAT TTGGGTTATC
CCTATTATGG GCTTTGCTTT ATTAGCGCTG ATTATCGCCC TAGTGAAAGC GGTGACCTTA
TTTAGACTCG AGAAAGTTCA GCCGTTATCG CAAAAAGTTC AGCCGTTCTC ACAAAAAGGC
GAGCCGTTAT CGCAATTAGC AGGCGCTGGC CTTAAGAGGG CCGCCCTTGG GCAGTATCAA
CAGGCACTAG CAGATATTGC TAAGCAATAC CCACAGATTG AGGCGCGCCA GCAAAGGGAT
GATTTGCTAT TGGATAGCCT TATTCAGACT AAGCGAGAAA TCGAGCGCGG CTTAACGGCG
ATTGCGGTTA CGGCATCGGT GGCCCCTTTA CTCGGATTGC TTGGCACTGT GAGCGGGATG
ATCCAAACCT TTAAGCTGAT GACCCTCTTT GGCGCGGGGG ATGCTAATGC TGTGTCCGGA
GGGATTTCAG AGTCTTTAGT GACCACAGAG CTTGGGCTTA TTGTGGCTAT TCCTGCGCTT
ATCGCTCATG CGCTGATGTC GCGCCGTTGT CATCACTTTA TGGCAGGGCT TGAATCTTAT
GCAGTGGCCT TGTCTCACCA TTCAATAGTT GGAGATAACG AGCCTATCAT CACGAGTCAC
AGCAAAGAGG CGGTCCATGT TGCCTGA
|
|---|
| Protein sequence | MAQLSVNSHP LLRVLLKGLL RAPLRSSFSA CLIQNVISYC RVALASILKG LVLLASLYLG
AVNSATLASV ESEILTEIKQ SNQAYQRQLR AMTTERQGLL QQLAEQERKL KTLSTKAASI
TRGQDEQSMS LATLAQRLQS WKQQQDYLKH LLSGISSAKA IETPQQLSAY LAGFAKPSEF
IKQDIALSSG ELISGAMLSL GPMHWFISDD DEKGGLLTQV EQQWQLALSF DEAQLAQLSA
VKTDHQGVLA IDPSNNRSLV LAQHQESFAE HLGKGGIWVI PIMGFALLAL IIALVKAVTL
FRLEKVQPLS QKVQPFSQKG EPLSQLAGAG LKRAALGQYQ QALADIAKQY PQIEARQQRD
DLLLDSLIQT KREIERGLTA IAVTASVAPL LGLLGTVSGM IQTFKLMTLF GAGDANAVSG
GISESLVTTE LGLIVAIPAL IAHALMSRRC HHFMAGLESY AVALSHHSIV GDNEPIITSH
SKEAVHVA
|
|---|
| |