| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2153 |
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| Symbol | |
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| ID | 4018645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2550960 |
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| End bp | 2552306 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637956177 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_563158 |
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| Protein GI | 91793507 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.569131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAAT ATTTTATCTT ACTCAGTTTG CTAATAAGCC AGGTTTTAGT CAATCAGAGC
CTCGCCGCGC AGTTGGTTAT CAAATTCGAT GAGCCAAAAT TGCTGCTACA GCAAATAAGC
GCCACTGACT TAAGTGCCAT GCCAAGTTTA AATGAGGCTG AGCAAAGCCA GCAAAAGCTT
ATCAGTGACA AACTTAATAA CGCGCAATAC GCCGATTTAC TTGCAACACT TAAACAGCGC
CCCAAAGCGG ACATGAGTGC CGCAATGGCC TACTTGATTG GCCAATTAGC CCTGCAGCAG
CAACAGCTAA GCCTTGGGGC TGACTATTTT ACTCATGCCA TTAAGTTACA GACCAATTTT
GGTAAAGCTT ACCATGGGCT TGGATTGGTA CAATTGCAGT CAGATAATCC CATAGCCGCC
ACGAAAAACT TCGCTAAGGC GCTGCAGCTT GGGGTCAACG ACCCTCAAAT ATACAGTTTT
CTTGGCTATG GCTATATCCA GAGTGAGCAT TTTCACAGCG CTGTGGTGGC CTATCAGCAG
GCAAAGCTTT TTAACCCCGA TGACGCTCAG CTTAATCAGG CACTGCTTTA TGCTTATAAC
ATGGCGGGGC ATCACGATGC GGCGCTGAGT TTATTGGAGC AGATGCTTAA CGCCACGCCA
AATGATAAAG GATTATGGCT GCACCGCGCT AATGCATTAC TGAAAAAAGA TCAATTTAGT
CAAGGGATTG CCAGTTTAGA AGCCGCCATT AGGCTAGGTG AAAGCAATGC CGACAACCTT
GCCTTAACCG CTCAGTTGCA GTTGCAGCAT GGCAGCATCA ACAGAGCCCG CACGCTTTAT
GCCAGGATTT GGCAAACTCA AACGAATGCA CCATTGGTGT TTGAAGCCTG CGAGTATTTA
ATTGCCAACC AAGAGTTTGA TGCCGCCAAG GCGCTGCTCA AAAAAATGTC ATTACCGAAA
AACTCTCCCC ATGGGGTTCA AAGCCAACTG GCGTATTTAA AAGGTTTACT CGCTCAGCAA
CAGGGCAGTA TTGCTTTGGC TGCTCGCTCA TTTGAACAAG CCTTGAGTTT CAATGGGGTT
AACGGCAAAG CCTTATTGGC TTTAGCGGCG GTTAAACGCT CGCAACAACA GAGCCATCAA
GCGCAAATGT TGCTGCTGCG AGCGGGGGCA CTGGATGAGG TTAAATTGCA GGCGTTGACT
GAGCATGCTG ATCTGATGAT GGCCCTTGGC CGTTACCCCA AAGCCCTTGA GTTGTTGCAA
CAGGCTGCTG ATTTCGCACC ACAAGAGCCG AGCTTATTTG AAAATATTCA AATTTTGCAG
CGACTTGTCC GTCAGGGCAG CGCATAA
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| Protein sequence | MMKYFILLSL LISQVLVNQS LAAQLVIKFD EPKLLLQQIS ATDLSAMPSL NEAEQSQQKL
ISDKLNNAQY ADLLATLKQR PKADMSAAMA YLIGQLALQQ QQLSLGADYF THAIKLQTNF
GKAYHGLGLV QLQSDNPIAA TKNFAKALQL GVNDPQIYSF LGYGYIQSEH FHSAVVAYQQ
AKLFNPDDAQ LNQALLYAYN MAGHHDAALS LLEQMLNATP NDKGLWLHRA NALLKKDQFS
QGIASLEAAI RLGESNADNL ALTAQLQLQH GSINRARTLY ARIWQTQTNA PLVFEACEYL
IANQEFDAAK ALLKKMSLPK NSPHGVQSQL AYLKGLLAQQ QGSIALAARS FEQALSFNGV
NGKALLALAA VKRSQQQSHQ AQMLLLRAGA LDEVKLQALT EHADLMMALG RYPKALELLQ
QAADFAPQEP SLFENIQILQ RLVRQGSA
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