| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2078 |
|---|
| Symbol | |
|---|
| ID | 4018570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2465990 |
|---|
| End bp | 2466688 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637956102 |
|---|
| Product | 6-phosphogluconolactonase |
|---|
| Protein accession | YP_563083 |
|---|
| Protein GI | 91793432 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0363] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase |
|---|
| TIGRFAM ID | [TIGR01198] 6-phosphogluconolactonase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.797187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAG ACACAGTATT TAAATCGTTC GACAATACAA GTGCACTCGA AGCCAAGCTT
GCAGATAACA TTGCCCGCCA GCTTCAAGAT GCGGTGGACT CAAGAGGCAA GGCGAGCTTA
GTGGTTTCTG GTGGTTCAAC GCCATTGAAA TTATTTGATC TATTGAGTCA AAAATCCATT
GATTGGGCTC AAGTTTATAT TACTCTTGCT GATGAACGCT GGGTTGGTAG CCATGAAAAA
GATTCAAATG AGCGCTTAGT GCGCGGCCAT TTATTGCAAA ATAGAGCGGC CAGCGCCAAG
TTTTCCGGCC TTAAGAATAT GTTCACCACG GCAGAAGCTG GCTGTGACAT GACCATCAGC
GCATTAGCGC ATTTTCCGCG CCCCTTTGAT GTTGTGGTGC TCGGCATGGG CACAGATGGC
CATACCTGCT CTTGGTTCCC TTGCAGTGAG GCGCTAGACA ACGCGCTTAA TACTCAAGCG
TTATGCGCCG CAGTCACGCC AACGACTGCG CCCCATGAGC GTATTACCTT GTCCAAAACG
GCGATTTTAA ACAGTCGTCA GATCTACTTG CACTTAGTAG GTGAAGCCAA ATTATCCGTC
TATCATCAAG CGCTTGCACA TGATGATGTG TCCAAAATGC CGATTAGAGC CGTTCTTGGC
CAGCGTAAAA CGCCGGTCGA CGTGTTCTAC AGCGCGTAA
|
|---|
| Protein sequence | MIKDTVFKSF DNTSALEAKL ADNIARQLQD AVDSRGKASL VVSGGSTPLK LFDLLSQKSI
DWAQVYITLA DERWVGSHEK DSNERLVRGH LLQNRAASAK FSGLKNMFTT AEAGCDMTIS
ALAHFPRPFD VVVLGMGTDG HTCSWFPCSE ALDNALNTQA LCAAVTPTTA PHERITLSKT
AILNSRQIYL HLVGEAKLSV YHQALAHDDV SKMPIRAVLG QRKTPVDVFY SA
|
|---|
| |