| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1925 |
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| Symbol | |
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| ID | 4018414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2280898 |
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| End bp | 2282376 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637955947 |
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| Product | triple helix repeat-containing collagen |
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| Protein accession | YP_562931 |
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| Protein GI | 91793280 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGGA TTTTTCACTC TCTAACCACA GTCGCCCTCT TGGGCTTAAG TTCAGCATCG
GCCGTCGCAT CAAACTGGGA TGCCCATTGG TCCTTTGCCG GCCATGGTAA TGACAACTTT
AATGGTGCCC ATCACGGTGC CTTCCCGCTA AGCGGCACTG GTAGTTTCGA ATTCGGCAAG
CTTAATCAGG CCCTTTATTA TGACATTCTT AAAGTGGACT CCTTGAGCAT TCAAAAAGCG
GCTGAGCCTT TCTCTTTGTC CTTCTGGGCC TTGAGAGAAA CCCGTGATTA TGCCGAGACC
TTATTCTCTA AACAGCAGTC GCCATTCAGC GCCGGTATGT CGGTCAGCCT CGATGGTGCC
AATGCCATAG TGGTGGATAT TCGTAATGGT CAAGGCGGCA GTATCAAGAT AAAGAGTCAG
CAAGTCTGGA CCGATATGAA TGATTGGCAT CATTTAGTCG TGACCTACAA TGGCTCAATT
CAGGCAGGTG GCATTAGTTT GTACCTTGAT AATCAACGGC TTGATGTCGA TGTTATCAGT
GACAACTTAA CCGGAGACAT AGGGGCAAGT GACCCTGTCG TTATCGGTGC TGACAGCGAA
ACTAGCTACG CCACCTTCAA CGGTGCCATC GATGAAGTCT ATTTAGGCAG CCGCGCCTTT
AATAGCAGTG ATATCGAGTG TCTGTATGCG CTGAGAGACA ACTGTGTCGA TCCCATTAGT
GACGAGCCTC CAGTGATTGC CCCTCAAGGG CCACGGGGCT TTGAAGGCCC CGCTGGGCCA
CAGGGTCTAC GGGGGGCAAC AGGCTCGCAA GGTGTTAAGG GAGCGAAAGG CCCAATTGGC
GACCCAGGCG TCAAAGGCCC GCAAGGCTCG CAAGGCAGCA AAGGCGATCT GGGCTTGAAG
GGCCTAACAG GCATCACAGG TAATCCAGGT ATTGATGGCC GTAATGGCCG TGATGGTAAA
GATGGCAACG CGGGCTTAAT GGGCTTACAA GGCCCAGATG GCCTGCAAGG CCCTAAAGGA
GTCCGGGGGG ATACTGGCCC GATGGGACCA CAGGGCGATC CTGGACCTCA AGGCTTAAAA
GGGCCGACCG GCGCCAAGGG CGTCACGGGC GCCACTGGTG ATGCTGGCCC ACAAGGCTAC
GCTGGTGCAG CAGGTGTGGT CGGTGCAGAT GGTACTCAAG GCGCTAAAGG CGATAAAGGA
CTAACTGGAG CAACCGGACC TACTGGACAG AAGGGGGCAA CAGGACAAAA GGGCGGACCA
GGTGATAGAG GGCCTCATGG CGTAGTTATT AAGGGGCCGA AAGGCGCCGA AGGTGATCCA
GGAGCAAGAG GGCCGCAAGG ATATTCTCGA TATTACCAAG AAGGTTTTTC AAATTTTAGC
ACGGAATTAG CAGAGTCCTC AACGAAGGAA CTGAGTCCGG TTGAGCTATA TAAGGCGATG
AAAGCAGAGC AAACTATCCA GGACGGAGCA ATAAAATGA
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| Protein sequence | MKRIFHSLTT VALLGLSSAS AVASNWDAHW SFAGHGNDNF NGAHHGAFPL SGTGSFEFGK
LNQALYYDIL KVDSLSIQKA AEPFSLSFWA LRETRDYAET LFSKQQSPFS AGMSVSLDGA
NAIVVDIRNG QGGSIKIKSQ QVWTDMNDWH HLVVTYNGSI QAGGISLYLD NQRLDVDVIS
DNLTGDIGAS DPVVIGADSE TSYATFNGAI DEVYLGSRAF NSSDIECLYA LRDNCVDPIS
DEPPVIAPQG PRGFEGPAGP QGLRGATGSQ GVKGAKGPIG DPGVKGPQGS QGSKGDLGLK
GLTGITGNPG IDGRNGRDGK DGNAGLMGLQ GPDGLQGPKG VRGDTGPMGP QGDPGPQGLK
GPTGAKGVTG ATGDAGPQGY AGAAGVVGAD GTQGAKGDKG LTGATGPTGQ KGATGQKGGP
GDRGPHGVVI KGPKGAEGDP GARGPQGYSR YYQEGFSNFS TELAESSTKE LSPVELYKAM
KAEQTIQDGA IK
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