| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1820 |
|---|
| Symbol | |
|---|
| ID | 4018303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2145148 |
|---|
| End bp | 2146185 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637955837 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_562827 |
|---|
| Protein GI | 91793176 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCTA AAGCGACCTC AATCGACATT GCTTACCGCG CCGGTGTGTC ACAATCTACC
GTATCCCGGG CCCTTCGCAA TAGTCCTTTA GTTAACCCTG AAACCCGTCA GCGTATTCAA
GCTATTGCAA AAGAGCTTAA CTACAAGGTT GATAAGAATG CCAGTAACTT ACGCACTCAA
AATAGTCATA CCTTAGCCTT GCTGATCTGT GAAGACCCTA CCAACGATGA CTCTCTCATC
AATCCTTTCT TCCTATCTAT GTTAGGCTCA ATTACTCGAG CCACGGCGCA GCAAGGCTAT
GATTTGTTGG TATCTTTCCA ACAGCTATCC AGTGACTGGC ATGCCGACTA TGAAGACAGT
AACAAGGCTG ATGGCATTAT TCTGCTGGGT TATGGTGACT ACATGGATTA TGAACAAAAA
TTGCTTAAGT TGCTGGAGCA GGATACCCAT TTTGTCATTT GGGGCGCAGA GCATAATAAC
AAATCTGTAT TGTCGGTGGG GTGTGATAAT CATCAGGGAG GCGTGAGTGC CACTGAGCAT
TTGTTATCTT TAGGCGTCTC AGATATTGCT TTTCTCGGGG ATGCTTCTAG CCACAGCCCA
GAATTTAGAG ATCGCTACTT AGGTCATGTT AGTGCCATGA AGGCTAAAGG AATAAAAGCG
GATAAACGTA AACAGTTTGA TGCGATTAAT ACTGAGGCTT CAGGTTTTGA TGCTGCCAAT
CTGCTATTAG ATAAAGGGCT TAGCTTCGAT GGTATTTTTG CTGCCAGTGA CTTGATTGCT
ATTGGCGCAA TGCGGGCATT ACATCTTCGC GGGGTGCGAG TGCCAGATGA TGTGGCCATC
GTTGGCTACG ACGATATCCC CGTGGCAAGT TTTGCCAATC CTCCCTTGAC CACAGTAAAG
CAAAATACAC GCCTAGCGGG TGAAATTCTC GTGGATAGTG TGCTTAAGCT TATCCGTGGT
CAAGCTGTGA GCCCGCAATT GATCCAAACT GAATTGGTGG TGCGTCGTTC CTGCGGCGAA
AGCGACCCTA AAGCATAG
|
|---|
| Protein sequence | MASKATSIDI AYRAGVSQST VSRALRNSPL VNPETRQRIQ AIAKELNYKV DKNASNLRTQ
NSHTLALLIC EDPTNDDSLI NPFFLSMLGS ITRATAQQGY DLLVSFQQLS SDWHADYEDS
NKADGIILLG YGDYMDYEQK LLKLLEQDTH FVIWGAEHNN KSVLSVGCDN HQGGVSATEH
LLSLGVSDIA FLGDASSHSP EFRDRYLGHV SAMKAKGIKA DKRKQFDAIN TEASGFDAAN
LLLDKGLSFD GIFAASDLIA IGAMRALHLR GVRVPDDVAI VGYDDIPVAS FANPPLTTVK
QNTRLAGEIL VDSVLKLIRG QAVSPQLIQT ELVVRRSCGE SDPKA
|
|---|
| |