| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1435 |
|---|
| Symbol | |
|---|
| ID | 4017424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1671783 |
|---|
| End bp | 1673984 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637955443 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_562444 |
|---|
| Protein GI | 91792793 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCAAG CTTTCACCAA TGAGTTCAAT TATCGCCACT TAGGCTTTGC CGTATTTATG
GGTGTTATTG GCTTACTCAT TAACCTTTTT CCAATTCCCT TATTTGCCAA TGTTGCACTA
GTGCTAGGTA ATACCTTTAC TGTGATTGTG GCTATTTTAC TCGGCCCTTG GCATGCATTA
CTCACTGCCA TTATCGCTGT GACGGGATTA ATGTTGGTAT GGGACAGCCC CCATGTGTAT
TTAATTTTTA CCCTTGAAGC GGTATTTTTA GGCTTAGCCA GACGCCGTGA TATTTATGCA
CTCTACGCCA GTGGCGCTTA TTGGTTGCTA TTAGGGGGGC CCCTGCTTTA TCTTTATTTG
CACGCTTTTG TCGAAAGCCC TAATGGCCAT ATGCCGTTTG CCATCATGAA GCAAGTGATC
AATGGTCTTA TTTGTTCAAG TTTAGCTTCC ATCTGCATCA TATTAATCCC AGCGTTGTGG
AATTTTGACG GTAAGATAAA AGACAAACAT AGGCGCCATT TTAGCTCACA ATTAACCTAC
AGCGTGACTT TGCTAATCAC CCTAAGTTTA CTTTTTTCAT CTCTGGTGTA TAACTACTTC
TCCCTTGATA AACAGCAAAC TCTCATCAGT GAAAACCTTG AAGAAACCGC TGAACACATA
GCCAAGGCCA CTGAAAAATA TCTGAATAAC CACATTAACG TCGTTAAGAA TGCCGCCTAT
CTCATTAGTG TGTCAGAAAC AAATGCAAGT GAATGGCAAA CATGGCTTAG CAGTATCCAC
AATAATTACC CAAGCTTCTC CACCATGTTG ATTGCCGATC CGAAGGCAAT AGTGGTCGCT
GCCACCCCAA AGGCATTATT CACTGAACTC AACAAGAATA AGCAACTGGC CTCCATCGAG
GACAGGGAAT ACTTCATTCA AGCTTTTCAC CATCAACAAA CTTACTTGTC AGCAGCCTTC
ATGGGACGAG GTTTTGGTAA TGATCCCATA GTTGCCATCA GTGCGCCCTT TTACGCCAAG
GAATATTCAG ATAAAAGCGA ACAGACGCCA ATAGGCATCA TCGAAGGTTC ATTAGATCTC
CGAAATTTCG ATTCCATAGA CAGCCACAAT CGATTCAGAG AAAAACAGGG ACTTATCATC
ATTGATAGCA ACAACAAACT GGTCTATTCA TCTAGCAGTT TAAAGCTTAA GCTCATGAGT
GATTTTCGCT ATTCCGATGA TCATCAGCGC TTCAATACTC AGCTTAATTT AATCAATATT
AATGAGCTTA ACGCCTTTAC CCCTGAATAC ATCTTTGCTC AAAGACGCCT GCCCAATGGC
TGGCAAGTCT TTGTTGTCGA CCCTTTCTCC CCTTTGATGG AAGTCGCCCA AGAGCAGTTA
TTTAATAGCT TCTTATTACT GTTAATATCC GTATTCTTTA GTTTTATCAT TTCGAAAAAA
ATAAGCCAAC TACTGACTGA GCCCCTTAAG CTGATTGCCC ACAGATTTAG CCAGCTTAAC
GATAAAGAGC TCAAAGAGCA GTTGCTCGAT GAAGGGACCC CTATAGAAAT AAATAGCCTG
TATCATCAGT TAACTATGAG TAAAAATCAG CTGATCACTC ATCAGCTTGA ACTCGAAGAA
GTGGTAGCCC AGCGCACTCA AGAGCTAGAA GAGGCCAATA AAAAACTGCT TATATTAGTG
GATAGAGATC CCTTAACCGA CCTTTATAAT CGCCGTTATG CTGAGAATAA ATTTGCCGAG
TTGAGGGATT ATTGCCATCG TAGCGGTCAA GCCATCACCA TAGCAATTCT AGACTTAGAT
CACTTTAAAC AAGTCAATGA TACCTATGGT CATCAGGCCG GAGATGAGTG TCTTCAGATG
GTGGCTAACT GCTTACAAGA GTACTTTACT CGTGACACTG ACATTATTGC CCGCTTCGGT
GGGGAAGAGT TTATTTTAAT TTTACCTATG AGTAATGCCT TACACATTCA GCAGCACCTC
AATGGATTTA GAGAAGCTTT AGCAGCTATG GTGATCTGTT CACCACAAGA TGAAATCACC
TTTACTGTGA GTGCCAGTAT TGGTGCTATC ACTGCCAATG CTGATTTTGA CAAGTCTTTG
GATAAATGGC TTAAAATTGC CGATGACAAT CTATACCTCG CCAAAGATCA AGGTCGAAAT
CGAGTGATCG TCAGTGTGAT CGCTGAAGAC CCACTAGAAT AG
|
|---|
| Protein sequence | MPQAFTNEFN YRHLGFAVFM GVIGLLINLF PIPLFANVAL VLGNTFTVIV AILLGPWHAL
LTAIIAVTGL MLVWDSPHVY LIFTLEAVFL GLARRRDIYA LYASGAYWLL LGGPLLYLYL
HAFVESPNGH MPFAIMKQVI NGLICSSLAS ICIILIPALW NFDGKIKDKH RRHFSSQLTY
SVTLLITLSL LFSSLVYNYF SLDKQQTLIS ENLEETAEHI AKATEKYLNN HINVVKNAAY
LISVSETNAS EWQTWLSSIH NNYPSFSTML IADPKAIVVA ATPKALFTEL NKNKQLASIE
DREYFIQAFH HQQTYLSAAF MGRGFGNDPI VAISAPFYAK EYSDKSEQTP IGIIEGSLDL
RNFDSIDSHN RFREKQGLII IDSNNKLVYS SSSLKLKLMS DFRYSDDHQR FNTQLNLINI
NELNAFTPEY IFAQRRLPNG WQVFVVDPFS PLMEVAQEQL FNSFLLLLIS VFFSFIISKK
ISQLLTEPLK LIAHRFSQLN DKELKEQLLD EGTPIEINSL YHQLTMSKNQ LITHQLELEE
VVAQRTQELE EANKKLLILV DRDPLTDLYN RRYAENKFAE LRDYCHRSGQ AITIAILDLD
HFKQVNDTYG HQAGDECLQM VANCLQEYFT RDTDIIARFG GEEFILILPM SNALHIQQHL
NGFREALAAM VICSPQDEIT FTVSASIGAI TANADFDKSL DKWLKIADDN LYLAKDQGRN
RVIVSVIAED PLE
|
|---|
| |