| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1394 |
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| Symbol | tolB |
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| ID | 4017357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1624669 |
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| End bp | 1625997 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637955396 |
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| Product | translocation protein TolB |
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| Protein accession | YP_562403 |
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| Protein GI | 91792752 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000000203609 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATTT TGGCTAAATG GTTAACCTTA GCGACGCTAA TGTTAACGGC ACAAGTAAAT
GCAGCACTCG ATATCGTCAT CACTGAAGGT GTAGATGCTG CGCGCCCAAT CGCAGTCGTG
CCATTTGTGT GGGAAGGTCC AGGTGCTGCA CCGCAGCAAA TTTCTGATAT CGTTATGGGC
GACTTAAGCC GTAGCGGTAC CTTTAAACCG CTAGACATTC GTGCATTACC ACAACACGGT
ATTAGTTCAG TGGCGCAATT CGCCGCCGCT AGTTGGGGTA AAGTGGGGGC AGAAGCCGTA
GTCATGGGGT CTATTAAACC TTATGGCGTC GATCAGTTTT TAGTGAATTT TGAGCTGATC
GATTTAGTCA GAGCCCAAAG CCAAGCTTTA AAAGGACCGC AGAATAACAC AGAGCTTGTG
CTAGAAAGTC GTCAAACAGT CATTAGCGCG AATCAGTTTA GGCAATATGG TCACAGAATA
AGTGACATAG TGTATGAAAA GTTGACCGGC ATTCGTGGCG CATTCTTGAC CCGTACCGCT
TACGTCGTGG TTAAGCAAGG TCAAAAAGCC CCGTATCACT TGATGATTGC CGATTACGAT
GGCTATAACG AGCAGATGTT GTTGCGATCG CCAGAGCCTT TAATGTCGCC AACTTGGTCT
CCTGATGGGC GCCGTTTGGC CTATGTGAGC TTTGAAAACC GCAAAGCGGA AATCTTTGTT
CAAGACATTT ATAGCCAGAC TCGCACTTTA GTGAGTAGCT ATCCTGGAAT TAACGGCGCG
CCCAGTTTTT CACCAGATGG TAAAAAATTG GCTGTGACCT TGTCTAAAGA TGGTCAGCCA
GAAGTCTATG TTATCGACAT CGCCACTAAG GCGGCTAAAC GAATCACAGA TCACTATTCG
ATTGATACTG AGCCTTCTTG GTATCCAGAT GGTAAGTCAT TGTTATTCAC CTCTGAACGA
GGTGGCAAAC CACAGATTTA TAGCGTACAT TTGGACACAG GAAAAGTGTC TCGAGTGACA
TTTGAAGGTG AATGGAACTT AGGTGGTTCT ATCACACCAG ATGGTCGCAG TATGATTTTT
GTGAACCGTA CTAATGGAAA ATTCCACATT GCTAGAATGG ATTTAGCCAC ACGCTTTTTG
CAGGTGTTAT CGTCGACGCA ACTCGATGAA TCACCAAGTG TTGCTCCAAA TGGCACTATG
GTTATCTATG GTACGACTCA CCAAGGTAAG CAAGTTTTAG CTGCTGTCTC TATGGATGGC
AGATTTAAAG CAAGATTACC TGTCGGCCAA GGCGAGGTGA AGTCACCCGC ATGGTCTCCG
TTTCTCTAA
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| Protein sequence | MKILAKWLTL ATLMLTAQVN AALDIVITEG VDAARPIAVV PFVWEGPGAA PQQISDIVMG
DLSRSGTFKP LDIRALPQHG ISSVAQFAAA SWGKVGAEAV VMGSIKPYGV DQFLVNFELI
DLVRAQSQAL KGPQNNTELV LESRQTVISA NQFRQYGHRI SDIVYEKLTG IRGAFLTRTA
YVVVKQGQKA PYHLMIADYD GYNEQMLLRS PEPLMSPTWS PDGRRLAYVS FENRKAEIFV
QDIYSQTRTL VSSYPGINGA PSFSPDGKKL AVTLSKDGQP EVYVIDIATK AAKRITDHYS
IDTEPSWYPD GKSLLFTSER GGKPQIYSVH LDTGKVSRVT FEGEWNLGGS ITPDGRSMIF
VNRTNGKFHI ARMDLATRFL QVLSSTQLDE SPSVAPNGTM VIYGTTHQGK QVLAAVSMDG
RFKARLPVGQ GEVKSPAWSP FL
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