Gene Sden_1376 details

Gene Information

• Locus tag: Sden_1376
• ID: 4017739
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 1599005
• End bp: 1600837
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637955373
• Product: thiamine pyrophosphate enzyme-like TPP binding region
• Protein accession: YP_562385
• Protein GI: 91792734
• COG category: [G] Carbohydrate transport and metabolism; [H] Coenzyme transport and metabolism; [R] General function prediction only
• COG ID: [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGTCAT CCATACAAGA AAACTTCGGT TTACAGTACC ATAACAGTCT ACCGCAACTT 
GGGCATAGCA TAGCCGAGTT ATTGCAATTT TTTGGCGCGA ATCGAGTCTA TGGTGTGGGA 
GGAGATTTCG TCGCTAACCT TATCAATTCA CTGGAAAGCA CATTAGCGGT ACTTCCCTCC 
AGCAATGAAA TGCATGCCGG TTTCAGTGCC TGTGCACAAG CAGAAGTTGC GGGGTTAGGT 
GTGTGTTTAA TGACCTATAC CGTTGGCAGT CTGCCTTGTA TATCTGCAGC AGCCCTTGCC 
CGCACCGAAG GTCTGCCGGT CATTTTTTTA TCCGGGGCGC CTGGGGAGAA TGAAATTGCT 
CAGCACGCGT TACACCACAC AGTGCACCCC CATTCGGCCT GGCATACCGA CCTTAACGCC 
GCGCTGAATG CGTTTAAGGC GCTGGGGATC CGTGCCGAAC GTTTACAAGG TCAAAGACAC 
ACAGGTCAGC CCAATATCGC AGCAGAACAA TGCTTAAGCT TACTGAGTCA TGCCTATATC 
AACCGTCAAC CTGTGTATAT TGAGATCCCT CGAGATTTAG TTAATCTAGC CACCCAAGCA 
TTGAGTTTGC CCGCGAACCT TGATGCGCTG CTAGCCCCTA GATTGAATTT AACTGGCGCG 
GAATTTATCG CCGCCGAGAT CATCGAAAAG TTAGCCCACT CTTCTGCACC TCTCTTGTTT 
CTGGGTGAAA AATTACGACT GAATCCAGCA TTATTGGCAA GCTTAGTCCA GTTATGCAAA 
CGCCATCAAA TCCCCTATGC GGTGACTTGG TTTGCTAAAG GCATGGTCGA TGAAGCCGAT 
GCGCTCTGTC TTGGCTGTTA TAACGGGGTT TTTAGTCACA CCATAGGCAA GATCTATATT 
GAAACTATGG CCGATTATGT ACTCGAAATT GGCACGTCAA TCTTCCCATC TGATACTAAC 
AACGCCTTTG GTAGCCAAAC CCACGCGATT GATAATCACC CTAATAAGAC CATGCTAAAA 
GGCACCGCGA TGTGGGAGCA AGATATTCTC GCCGTGATTA GCATTCTCGA TACCATCACC 
CAATTGACCC CTATTCCCAG ATCGCAACCG GCGAGTGACT TTATTAATAA TAAGCCGGCA 
TTAATCGATG AAAATCGACA ACGCCTTGAG CCGCTTGAAC CACTGAGTTA CGCCAATTTG 
GCAAAAGTAA TCAACGCGGC GCAAATCACC TTGCCCCGCC CCTATATTTT CATCCCCGAG 
GTAGGTAACG CCTTCTTTGC CAGTTTCGAA TTGGAAACCT TAGGTAATCA GCTAGGTCGT 
AGCTTCTTCG CCAATCCATG GTATGCCGCT ATGGGCACTA GCCTACCCTA TGCCAGAGCC 
ATTGCCGATG AATTGCAATG GCAACAATGC CAGCAGCCCA TTTTAGTCAT CACTGGTGAT 
GGTGGTTTTA ATTTTCAATC AAATGAACTG ATTAACTTAC AAAAACAAAA TGCTAACATA 
ACAATACTTT ATATGCGTAA TAACGTGTTC CATCTGGGCA AAGCCGGCAA TGCGCCTATA 
TATCACTGCA ACCATCAAGG TTTCGATCCA AAAATATTGA TCCAAGCTTA TGGTGGTGTA 
GGCCACGTTT GCCAAACCAT CACTGAATTA CTCGACACGC TTAAACGCAC CGCTACAGGG 
GGGTTACATC TTATTGAAAT TAACACACCA ATCGCGCTTG AACAGCAAAG TGAAATCAGT 
CGAAAACTCA ATTCCTATAT AGGTTTCAAA AATGGCGATC CCACGGCAAT GCGTCAATGG 
CAAAGTTTGT GTGGTAATTC TCAAGAAAAG TGA 

 

Protein sequence

MTSSIQENFG LQYHNSLPQL GHSIAELLQF FGANRVYGVG GDFVANLINS LESTLAVLPS 
SNEMHAGFSA CAQAEVAGLG VCLMTYTVGS LPCISAAALA RTEGLPVIFL SGAPGENEIA 
QHALHHTVHP HSAWHTDLNA ALNAFKALGI RAERLQGQRH TGQPNIAAEQ CLSLLSHAYI 
NRQPVYIEIP RDLVNLATQA LSLPANLDAL LAPRLNLTGA EFIAAEIIEK LAHSSAPLLF 
LGEKLRLNPA LLASLVQLCK RHQIPYAVTW FAKGMVDEAD ALCLGCYNGV FSHTIGKIYI 
ETMADYVLEI GTSIFPSDTN NAFGSQTHAI DNHPNKTMLK GTAMWEQDIL AVISILDTIT 
QLTPIPRSQP ASDFINNKPA LIDENRQRLE PLEPLSYANL AKVINAAQIT LPRPYIFIPE 
VGNAFFASFE LETLGNQLGR SFFANPWYAA MGTSLPYARA IADELQWQQC QQPILVITGD 
GGFNFQSNEL INLQKQNANI TILYMRNNVF HLGKAGNAPI YHCNHQGFDP KILIQAYGGV 
GHVCQTITEL LDTLKRTATG GLHLIEINTP IALEQQSEIS RKLNSYIGFK NGDPTAMRQW 
QSLCGNSQEK