Gene Sden_1279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1279 
Symbol 
ID4017547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp1498681 
End bp1499301 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content45% 
IMG OID637955275 
Productregulatory protein, TetR 
Protein accessionYP_562288 
Protein GI91792637 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.211303 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAATG AGCTGAAAAA AACCAAAAGT CGTAGCGAAA TTAAGCGCGA GCAGATCTTG 
CACTCCGCGA TTGAGCTCTT TTGCGTTCAG GGTTTTCCTA ACACCAGTAT GGATGAGGTG 
GCCAAATTAG CTGGGGTGTC TAAACAGACT GTCTATGCCC ATTTTGGTTC TAAGGATGAT 
TTATTTGTCG CAGCAATTGA GTCCCGTTGT ATCGCTCATC AATTGACAGG GGACTTGCTG 
TTTGACCCTA AGCACCCAGA AGTGTCAATT ATGCGTTTCT CACAGCAATT TGGTGAGATG 
ATAGTCAGCC ATGAAACCAT GGCAGTGTTT AAAACCTGTG TCGCCCAAGC TGAAAGCCAC 
CCTGAACTAC CAAGGCTGTT TTTTAATGCC GGGCCTAAGC ATGTTTTAGG TTTGTTAAGT 
GGATTCCTCC AGTTGGTGGA CAAGCAAGGG GGGTATCATT TCCCTAAGCC CCATGACAGT 
GCTATTCGCT TGTGTTTGAT GCTCTTTGGT GAACTTAAAC TCAGGTTAGA GCTTGGGCTA 
GAGGTTGAAG AATTACGCTT AAGCCGTGAT GCCTATATAG AAGAGACGGC GCAGATGTTT 
TTACGTGCTC ATAGGGTATG A
 
Protein sequence
MINELKKTKS RSEIKREQIL HSAIELFCVQ GFPNTSMDEV AKLAGVSKQT VYAHFGSKDD 
LFVAAIESRC IAHQLTGDLL FDPKHPEVSI MRFSQQFGEM IVSHETMAVF KTCVAQAESH 
PELPRLFFNA GPKHVLGLLS GFLQLVDKQG GYHFPKPHDS AIRLCLMLFG ELKLRLELGL 
EVEELRLSRD AYIEETAQMF LRAHRV