| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1278 |
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| Symbol | |
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| ID | 4017546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1497359 |
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| End bp | 1498471 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955274 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_562287 |
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| Protein GI | 91792636 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0363804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACACCC TTAGATTTAA TCTAACAATG GTTTTTGGCT TAGCGACGAT GGGATTATTG
AGCGCCTGCG GCTCTGAAGT TAAACAGCAT AGCGATACCG TAAGCTACCA AACAGTGATC
ACAGATACCC TGAAGCAGAC CGACAGCTAT CAGCACAATC AAACCTACAG TGGCACCATA
CGCTCGGCCA ATACCACAGG CATAGGGTTT GAATTAGCAG GTAAACTTAA TCAGATTAAT
GTCGACAGTG GCGACACTGT GACTCAAGGC CAACAACTTG CCAGCCTAGA TACTGTCCTA
CTCCAAGCCG AACAGGCACA ACTTAGCGCC AGTTTGAAAC AGGTTGAGGC TGACATCACA
CTGGCCCAAA GTAACCTTAA GCGCACCATT AAACTCAAAC AAAAAAATTA TGTTTCAGAG
CAGCAGCTCG ATGAAACTGA GCAACAGGTG GCGAGCCTTC TCGCTAATCA GCAGCGCTTG
CAAGCCTCAC TGCATGCCAC TAATTTAAAA CTTGATAAGT CAGTACTGCT AGCACCTTTT
TCAGGAGAGA TAAGCCAAAG ACATCACAAT CTCGGTGAAG TTATTGCGCT CGGCAGCCCA
GTTTTCACCT TAATAGGCCA TGAACAAAAA TTAGCTTATA TCGGCGTGCC TGTTGATGTA
GCCCAAAAAC TTGTCAATGG TCAACAAGTT GATATCACAG TCGCCCAGCA GCACTACCAA
GGGGTAATCG CTGGCATCAG CGCCGAGGTG AATCCCGTTA GCCGCACAGT ACAGCTAAGG
ATAAGTTTGC CAAAGGGGGC TTATGCCATC AATGGTGAAA TCGCCTACCT AACATTAGAA
CAACAGATCA TGGCTCAAGG TTATTGGATC CCCATCGATG CACTAACCGA TGGCATCCGT
GGGCTTTGGA ATGTCTATAC CTTAGTCAGT GATACTCAAG ATCACAGCGA AGTCCAGCGC
CGTGATGTAG AAATAATCTA CACCAACGAA CAGCAAGCCT ATATCAAGGG CGCGATAAAA
GAGGGGGATA TCATCATCAC TCAAGGCCTG CATAAACTGG TTGTTGGTCA GCGGGTTATC
CCAGCCAACA CTGAGATTGC GAGGTCATTA TGA
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| Protein sequence | MDTLRFNLTM VFGLATMGLL SACGSEVKQH SDTVSYQTVI TDTLKQTDSY QHNQTYSGTI
RSANTTGIGF ELAGKLNQIN VDSGDTVTQG QQLASLDTVL LQAEQAQLSA SLKQVEADIT
LAQSNLKRTI KLKQKNYVSE QQLDETEQQV ASLLANQQRL QASLHATNLK LDKSVLLAPF
SGEISQRHHN LGEVIALGSP VFTLIGHEQK LAYIGVPVDV AQKLVNGQQV DITVAQQHYQ
GVIAGISAEV NPVSRTVQLR ISLPKGAYAI NGEIAYLTLE QQIMAQGYWI PIDALTDGIR
GLWNVYTLVS DTQDHSEVQR RDVEIIYTNE QQAYIKGAIK EGDIIITQGL HKLVVGQRVI
PANTEIARSL
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