| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1244 |
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| Symbol | |
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| ID | 4017459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1451901 |
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| End bp | 1453637 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637955240 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562253 |
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| Protein GI | 91792602 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.118436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAAGGC TATTCAGTGT CGTTCTAATA TTGTTTTACA GTGTGTGCCT GCTTGCAGAT
GAACATCAGA TAGAACAAGA TTTTATTCAG CTTGAACAAG TGTTGCAGTC TGATACAGCA
ACGGCGGACA AGTTGTTGAA CAAACTGTTT AGCATTCAAG ACGAGTTAAC TACCGGACAG
TTGACTCGTC TTCATGTTAT TTCCAGCGCT CAAAAACTCA TCAAAGGCGA TTATCATGGC
GCCGATTCCC AACTTGATAA AGTCTTAACT TACCCACTCG ATGAGGCCAC TGAAAATACC
GTCTACCTCT ATAAAGTGAC CGCTAATATA GGCATGAAGC AATACACTAA AGCCTTTACC
TTATTAGAAG AAAACCTTGC AAGGATCGGT GGCTACGGTG AGCAAACCAT TAAAATTAGT
AGTTACTTGA GGTTGGTTAA TGCTTACCTT GATATGGGCG CTTATCAAGA AGCCAAGCAA
TATGCTGAAA CTGTGCTTGA TTTGAACCAA GGCAAGATGA TGCGAGAGCA ATGCTATGCG
TTAGTTTTAC TTTCTTATGC CGAACTTAAA TTGGCCATGC TTGATAAGGC AAAACAAGGT
TTTGCTGAAA CTCAGGCTTA TTGTGAGCAA CATGAAGCGC CATTGATTGT TGCCATGGCG
ATAAAAGGTA AGGGCATGTT GGCACTCGAG CATCAAGATT ATCGGTTAGC CGCCAAGATG
TTTGAAGATG CCTTACAGCG ATACCAAACG TTTAAGTTCA ACTTTGAAAT AGTGCGTACT
CAGGCGCTAC TCGCTCAAGC CTATTATCAT TTAGAAAGGT TAGGCCAAGC CTTGGTCTTA
GCACAGCAAG TGAGCGACAG TGCCGATGAG CCCAGTAATC TTGAACCTAA GAAGCAAGCC
TATGACGTAC AAGCCTCGAT CGCTTTTCAA AACGAAGATT TTAAGCAAGC TTATCAGTTC
CAGCTGCTTT CTCATGATCT GGAATTGCAA TTATTGAACG ATCAAATTTT GAAAGAAAAT
GCCTATCAGA TGGCAAAGTT TGATAGTGCT GAAAAAAATC GAGAACTGAC AAATTTAAAG
CAAGAGCATG AGTTGTTAAG CAAGCAGCGA GATTTAAATA ATCGTGATGC CAGTTCCTCT
TTGATGTTTA CCACCTTATT GATTGGTGCG GTTGCTTGCC TTAGTTTGTT ACTGTTTGCC
GCTTGGTTAC AGCGTAATCG TTATAAAAAA CAAGTACAGC GTGATGTGCT AACGGGGGCA
TATAACCGCT CTACGGGGCA AGAACGAGCG GAAATCGATT TTGTTCAATG CCTAGCCAGA
CGAGAGGATT ATTGCCTTAT TGTGCTCGAT TTAGATCGCT TCAAAATCGT TAATGAGAAA
TACGGCGATG CGACCGGTGA TTGGGTGCTT AAGCGCCTTA GTCAAATAAT GAGTGAAAAT
GTCAGTACTG AGGCTGTGTT TGCTCGCATG GGGGGAGAAG AGTTTGCCAT ATTTTCGCCA
AGGATTAACT TGGACGATGG GGTTAAGCTC GCTAAGTTAC TGTTGCAATT GATCCAAAAC
ATAGATACTC GTCATACTGG TCATGGGTTT CAAATTAAGG CAAGCTTTGG CGTCAGTGCC
ATGGAAGAAG ATGATTTAAG CATAGATCCA CTCATGCACA GAGCCGTGCT TGCCCTGCAA
CAAGCTAAGG CGAACGGCGG TAATCGAGTC GAAGTGGCTC AGTCTGGAGA GTTTTAG
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| Protein sequence | MVRLFSVVLI LFYSVCLLAD EHQIEQDFIQ LEQVLQSDTA TADKLLNKLF SIQDELTTGQ
LTRLHVISSA QKLIKGDYHG ADSQLDKVLT YPLDEATENT VYLYKVTANI GMKQYTKAFT
LLEENLARIG GYGEQTIKIS SYLRLVNAYL DMGAYQEAKQ YAETVLDLNQ GKMMREQCYA
LVLLSYAELK LAMLDKAKQG FAETQAYCEQ HEAPLIVAMA IKGKGMLALE HQDYRLAAKM
FEDALQRYQT FKFNFEIVRT QALLAQAYYH LERLGQALVL AQQVSDSADE PSNLEPKKQA
YDVQASIAFQ NEDFKQAYQF QLLSHDLELQ LLNDQILKEN AYQMAKFDSA EKNRELTNLK
QEHELLSKQR DLNNRDASSS LMFTTLLIGA VACLSLLLFA AWLQRNRYKK QVQRDVLTGA
YNRSTGQERA EIDFVQCLAR REDYCLIVLD LDRFKIVNEK YGDATGDWVL KRLSQIMSEN
VSTEAVFARM GGEEFAIFSP RINLDDGVKL AKLLLQLIQN IDTRHTGHGF QIKASFGVSA
MEEDDLSIDP LMHRAVLALQ QAKANGGNRV EVAQSGEF
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