| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1222 |
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| Symbol | |
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| ID | 4017488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1425869 |
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| End bp | 1427101 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637955218 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562231 |
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| Protein GI | 91792580 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGTGAAGC AACAGGACAG CCTCAAGCGA AAAAAAATAG ACACGTTAGA TTTTAGATAC
CACATAGTAT TATTAGTGTT ACCACTGATT TTATTTTCTT TGGTGTTTAC TTTCGCGATG
CCGAGCAGTC AACATGACTT TTTATCTTTA TCACTTATCT GCATTGTGTA CCTGTTTGGC
TATAGCCTAA GTTATTACCT GCACCAAGGC CGCATCATTC GCTTATGGCA ACACTTAGAG
CAAGTGGTCA ATATCAATGA TGCCACCTAC GAACTGGTCC ATCTTTCCAG CCAATACCAA
GACGAACACG CCTTCTTAGA TGCGCTACTC AATAAAGCCG TTGGGGTTAT CGATGGCGCC
GAAATGGGCA GCATCATTTT AGTCAACCCA AGAACGAACG AACTCAAATT TGAATGTACT
GTTGGGTTAG ACTTATTGCA GTTACAAAAG CTTAAATTTC ATCTAGAACA GTCGTTTGAG
TTTAGATTAA CCGATGGCCG CTGCGATCGC GTCGTGGTCA TAGATAATAT GCAACACGTT
AATGCCGCCA GTAACTTAAC CCAAGAAGAG CAAGATATCT TATTAACGGC AGCAACCCAG
CCCATTCGCT CCACCTTGTC CAGCCCTATC CACATTGACG GCAAACTCTA CGCCATGCTC
AACCTTGACA GTGGCAATTA CGGCGCCTTT AACGACTATG ATCGAAACTT GGTGGGAATT
TTAACCCATG AGGCCAGCAA CGCTATTGCC TTATACCAAA AATCACAACA AATACAAAAG
CTGGCTAATA CAGATCCGTT AACAGGCTTA TATAACCGTA AACGATTCGA AGAAAGATTA
AGCCAATGGC AGCACAAGCC GCAGCTGGGC AGTTTCTTAG TGATCTTAGA TATGGACAAC
CTCAAGACAA TCAACGATAT TCATGGCCAT CAAGCAGGCG ATCATGCCAT CACAGCCTTA
GCCGATGCCA TGAAAACTAT CTGGCCACAT AAAGCCTTAT TAGGCCGTTT TGGTGGCGAT
GAATTTGTGC TTATCTGCCA TGGTCCTGAA CATAAACTGG TTAAAGAGCT TGCCGAATTA
GCCGCACTTC TAGATAACCC CAAGGCTGGA TTTAAAGTGC AATTTAGTGC AGGGATTGCC
GACTACCAAG GAGATTGGCA TCAGGCATTT AAACAAGCAG ATTCTGCCAT GTACCTTGAG
AAACGCACTA AAAAGAGCTT AAAGCAAGCA TAA
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| Protein sequence | MVKQQDSLKR KKIDTLDFRY HIVLLVLPLI LFSLVFTFAM PSSQHDFLSL SLICIVYLFG
YSLSYYLHQG RIIRLWQHLE QVVNINDATY ELVHLSSQYQ DEHAFLDALL NKAVGVIDGA
EMGSIILVNP RTNELKFECT VGLDLLQLQK LKFHLEQSFE FRLTDGRCDR VVVIDNMQHV
NAASNLTQEE QDILLTAATQ PIRSTLSSPI HIDGKLYAML NLDSGNYGAF NDYDRNLVGI
LTHEASNAIA LYQKSQQIQK LANTDPLTGL YNRKRFEERL SQWQHKPQLG SFLVILDMDN
LKTINDIHGH QAGDHAITAL ADAMKTIWPH KALLGRFGGD EFVLICHGPE HKLVKELAEL
AALLDNPKAG FKVQFSAGIA DYQGDWHQAF KQADSAMYLE KRTKKSLKQA
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