| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1090 |
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| Symbol | |
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| ID | 4017373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1249505 |
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| End bp | 1250194 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955082 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_562101 |
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| Protein GI | 91792450 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0000837656 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCGTTTAG ATAAGTTTAT TACTGAAGCC TCTGAGCTCA GTCGTTCGTT AGCCAAGAAA
GCCCTGCATC GCGGTGATGT GACCTGCGAT GGTGTGATTG TGAAGGACTC AGGTTTTAAA
GTGGAGCCAG GCACAAAAGT GTGTCTTGAA GGGCGAGAGT TATCCCTATT TGGTGTGCGT
TACCTGATGC TCAATAAGCC AGTCGACACC ATTTGTTCAA CCATAGATGA AGTTTATCCT
TCAGTGCTAA GTCTGATAGA TGTTGAGAAG GCAAGCAATT TACACATAGC AGGGCGCTTA
GATGCGGACA CTACGGGCTT AGTGTTAATC ACTAGCGATG GCCAATGGTC TCACAGAGCC
ACATCACCGA AAAAAGATTG TGGTAAGCGT TATTTAGTGG AAGTGGCTGA GCCACTAGAT
GAGAGTTTGA TTGAAACCTT TGCTGAAGGC ATAGCCCTGA GAAACGAAGA TGGCTTAACT
AAACCCGCCA CGCTTGAGAT TATCGATAGC CATCATGCCA GACTCACAAT CACAGAAGGT
AAGTACCATC AGGTAAAACG CATGTTTGCC GCGACGGGCA ACGCGGTGAT TAATTTACAC
CGTGAGTGTG TTGGTAGCAT TGAACTTGAC CCCGGGCTTG CCTTAGGCGA GTGGCGTTAT
CTCACTCAAG CCGAAATCGA TTCGATTTAA
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| Protein sequence | MRLDKFITEA SELSRSLAKK ALHRGDVTCD GVIVKDSGFK VEPGTKVCLE GRELSLFGVR
YLMLNKPVDT ICSTIDEVYP SVLSLIDVEK ASNLHIAGRL DADTTGLVLI TSDGQWSHRA
TSPKKDCGKR YLVEVAEPLD ESLIETFAEG IALRNEDGLT KPATLEIIDS HHARLTITEG
KYHQVKRMFA ATGNAVINLH RECVGSIELD PGLALGEWRY LTQAEIDSI
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