Gene Sden_1059 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1059 
Symbol 
ID4017566 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp1211562 
End bp1212194 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content35% 
IMG OID637955051 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_562070 
Protein GI91792419 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATGA ATACATTAAT CTTGTTTGTC ATTGCAGCTT TATCTATAAA CTTGATCCCA 
GGCCCCGACG TTATCTACAT AGTAACCAAT ACAATGAAAG GGAAAATGAA ATCAGGAATT 
AAGGCATCCT TAGGTTTGGG CGTGGGGTAT TTGATTCATA CTTTAGCAGC AGCGCTAGGT 
CTTTCTGCAT TAATTTTGAG CTCTGCATTT TTGTTTACCC TGATTAAATA TTTAGGTGCT 
ATGTATCTCC TCTATTTAGG TTTAACGTCA CTGTTAAATT GTTACAGAAA AAAATCTAAA 
ATTTTGCTTG AAGACACTAA CAAAAAAGAT ACTGGAGTGT TTAAACAGGG AGTCATTATT 
AGTGTGTTAA ATCCTAAAGT AGCGATGTTC TTTCTGGCTT TCCTGCCTCA ATTCATCGAT 
CCTTTAGCAA TTAATGCGAC ACAAAACTTA TTAACTTTAG GCTTATTATT TAGTGTGTTA 
GCGACATCAT GCAACTTATT ATACGCAAGT CTAGGTAATG TTTTATTTAG TAGCCCTAAA 
GCGCAGAAAT ACTCAAGAGT ACTTGAAGGT GTATCGGGAA CTATTTTGGT TGGTTTAAGT 
GCAAAAATTG CATTAAGCAG TGATGAGTAT TAA
 
Protein sequence
MDMNTLILFV IAALSINLIP GPDVIYIVTN TMKGKMKSGI KASLGLGVGY LIHTLAAALG 
LSALILSSAF LFTLIKYLGA MYLLYLGLTS LLNCYRKKSK ILLEDTNKKD TGVFKQGVII 
SVLNPKVAMF FLAFLPQFID PLAINATQNL LTLGLLFSVL ATSCNLLYAS LGNVLFSSPK 
AQKYSRVLEG VSGTILVGLS AKIALSSDEY