| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1026 |
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| Symbol | deoA |
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| ID | 4017071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1173774 |
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| End bp | 1175105 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637955018 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_562037 |
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| Protein GI | 91792386 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.890001 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTTTAG CTCAAGAGAT AATTCGTAAA AAACGTAATG GCCAAGCGTT AACGGCTGCA
GAAATTCAGT TCTTCGTGAA TGGCATTACT ACAAATTCAG TTTCAGAAGG GCAAATCGCC
GCTTTTGGAA TGGCGGTTTA CTTTAATGAC ATGAATATGG ACGAGCGCAT CGCGTTAACC
ATAGGCATGC GAGACTCAGG CACAGTACTT AACTGGGACA GCTTAGGCCT TAATGGCCCT
GTTATCGATA AACACAGTAC TGGCGGGGTC GGTGATGTCA TCAGCCTAAT GCTTGGCCCT
ATGGCGGCGG CATGTGGCGG GTACGTTCCT ATGATTTCGG GGCGCGGCTT AGGTCACACA
GGGGGCACCT TAGATAAATT TGATGCCATT CTTGGTTATC AAACTGAGCC ATCGAGCGAA
CTGTTTAGAA AAGTGGTTAA AGAAGCAGGC GTCGCCATTA TTGGTCAAAC TGGAGACTTA
GTTCCAGCGG ATAAGCGCTT TTATTCGATT CGAGATAATA CCGCGACGGT TGAGTCAATC
TCATTGATCA CCGCCTCTAT TTTGTCGAAG AAATTAGCGG CGGGTTTAGA TGCGCTGGTA
ATGGATGTCA AAGTGGGTAG CGGCGCTTTT ATGCCAAGCT ACGCCGCATC GGAAGAGCTA
GCTCGCAGTA TTGCGGCAGT GGCTAATGGT GCGGGTACTA AGACTACAGC TTTGCTAACA
GACATGAACC AGGTGCTTGC ATCTTGCGCG GGTAATGCCG TTGAAGTCGT CGAAGCGATT
AACTTCTTAA CCGGCGAGTA TCGCAATCCC AGACTCTATG AAGTCACCAT GGGCTTATGT
GCTGAAATGC TAGTTTTGGG GGGTATCGCG CAAAATGAGA TTGAGGCCCG TACTAAACTT
AATACAGTAC TCGATAATGG CAAAGCGGCC GAAGTCTTTG GGAAAATGAT TGCAGGCCTT
GGCGGACCGA CTGACTTTAT TGAGGCCTAT GATAAGTATT TGCCTCAAGC TAAGATCATT
CGCCCTGTGT TCAGCGATGC ACAAGGCTAT GCCCACAGCA TGGATACCCG CGAGCTTGGA
TTAGCGGTTG TGACCTTAGG GGGCGGGCGT CGTAAGCCAG GCGACAAATT AGATTACAGC
GTAGGTTTGA CCCAAGTGTG CGCCCTTGGA GAGCAAATTT CTACGGATAA GCCGATTGCC
ATGATCCATG CACAGACGGA AGATGATTTC CTCGAAGCGG AACTAGCAGT TAAAAATGCG
ATAAAAATTC AATCTTCTAT GCCTGAAAAA ATGCCAGAGA TTTATCGCTA CATCCGTGCA
GCAGACTTAT AA
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| Protein sequence | MFLAQEIIRK KRNGQALTAA EIQFFVNGIT TNSVSEGQIA AFGMAVYFND MNMDERIALT
IGMRDSGTVL NWDSLGLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI LGYQTEPSSE LFRKVVKEAG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLAAGLDALV MDVKVGSGAF MPSYAASEEL ARSIAAVANG AGTKTTALLT
DMNQVLASCA GNAVEVVEAI NFLTGEYRNP RLYEVTMGLC AEMLVLGGIA QNEIEARTKL
NTVLDNGKAA EVFGKMIAGL GGPTDFIEAY DKYLPQAKII RPVFSDAQGY AHSMDTRELG
LAVVTLGGGR RKPGDKLDYS VGLTQVCALG EQISTDKPIA MIHAQTEDDF LEAELAVKNA
IKIQSSMPEK MPEIYRYIRA ADL
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