Gene Sden_0880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0880 
Symbol 
ID4016981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp1005082 
End bp1005672 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content46% 
IMG OID637954870 
Productcarboxypeptidase 
Protein accessionYP_561891 
Protein GI91792240 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2317] Zn-dependent carboxypeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCTGG GTCATAGTCA AGGTTTCCTG AGCTTCATTG CGCCAAAAAT AAACCAACAC 
TTGGGCTGTA ATTTTTCAGC CAATACACTC GCGGGGCTGT ACAACAAGGT AGAACCTAGC 
CGCATTCGTA TCGATGCCGA TGAAGTCACC TACCCTTGCC ATATTTTACT GCGCTTTGAA 
GCCGAGAAAG CCCTCATTGA AGGCAACCTT GAAGTCAGCG AGCTGCCAGA TTTTTGGTCC 
AGCCAGATGC AGTCGCTATT GGGTATTAAT ACCGATGGCG ATTATAAGAA TGGCTGCATG 
CAAGACATTC ATTGGACCTT AGGCGAACTG GGTTACTTCC CTAGCTACAC CTTAGGGGCT 
ATGTATGCTG CTCAATTACG TTTTGCGATG GAGCAAAGCA TAGGTGAACT TGAGCCTATG 
CTGCGCACAG GTCAATTTGA GGCTATTTTT ACTTGGCTAG ATAAGCATAT TTGGTCAAAG 
GGCAGTTTAT TGAGTACCGA TGAATTAATG CGCCAAGCGA CAGGAGAAAT CTTAAACGGG 
GATTATTTAC GCCAACACTT GAGCCAGCGC TACCTAAGTG TGAGTCGTTA A
 
Protein sequence
MQLGHSQGFL SFIAPKINQH LGCNFSANTL AGLYNKVEPS RIRIDADEVT YPCHILLRFE 
AEKALIEGNL EVSELPDFWS SQMQSLLGIN TDGDYKNGCM QDIHWTLGEL GYFPSYTLGA 
MYAAQLRFAM EQSIGELEPM LRTGQFEAIF TWLDKHIWSK GSLLSTDELM RQATGEILNG 
DYLRQHLSQR YLSVSR