| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0759 |
|---|
| Symbol | |
|---|
| ID | 4016598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 881281 |
|---|
| End bp | 881925 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637954744 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_561772 |
|---|
| Protein GI | 91792121 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTGC TAATCTGTAG CTATCATTAT TCTAGCTCGA GATTAACCTT GATAGACGTT
TTAAGCCTCA AAGGCATTAT TTTTGATCTC GATGGCACCT TAGTGACCTC GAGCCTAGAC
TTCAGGCTCA TCCGAGAAGA ACTGAACTGC CCGCAGCAGC AAGACTTATT AGTGTTCGTG
GCGCAGTTAA CCTGCCCAAA AGCTCAAGTG CAAGCCAATA AAATTATTGC CCGCCACGAG
TATCAAGATG CCCAAAGTGC AAAGCCTATG GCTGGCATGA CACCCCTGTT TGATGCCCTA
GAAAGCGCTA GGCTACCCAG CGCTATTGTC ACCCGCAACA GTCAAGTCGC CAGCACAGTG
AAAATCAGCA ATACCCGTAT TCCCGTTCAA CTGGTGCTGA CCCGTGAAGA TTATCCACCA
AAGCCTGCCC CCGATGCCTT ACTTGCCATC GCCGAGCTGT GGCAGCTTGA GCCGGCCTCG
CTCCTCTATG TGGGTGATTA TCTTTATGAT ATTCAAGCGG CGCACAATGC AGGCATGCAA
AGCTGCTTTA TCAATCATGG TCACAGCAAA GACTATCAAC ACCAAGCGGA TTTAGTGATA
AGCCATTTGG CTGAGTTAAC CGTCTTGCTC ACTCAGGCTA GATAA
|
|---|
| Protein sequence | MALLICSYHY SSSRLTLIDV LSLKGIIFDL DGTLVTSSLD FRLIREELNC PQQQDLLVFV
AQLTCPKAQV QANKIIARHE YQDAQSAKPM AGMTPLFDAL ESARLPSAIV TRNSQVASTV
KISNTRIPVQ LVLTREDYPP KPAPDALLAI AELWQLEPAS LLYVGDYLYD IQAAHNAGMQ
SCFINHGHSK DYQHQADLVI SHLAELTVLL TQAR
|
|---|
| |