| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0734 |
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| Symbol | |
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| ID | 4016840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 850675 |
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| End bp | 852489 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637954719 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561747 |
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| Protein GI | 91792096 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGCTTTG CATGGCAAAG TGATGACAGA GTCGATGCCC TGTTTAAAAT CTTAGATGAT
GGTGGCAGTG CCACAACCCA AGAGATTGGC GGCTATTTAA TGGAGCTTGA AAATCTCATC
CCTGCGGATG ACATAAAGCG GCAGAAAAAA CTGCTTACCC TCAAGTGTTG GAATCAAGAC
AGTGACAATG AGGCGAAAAA AAACCTCGCA GTCAAATTTG CCATAGAGCA AGAATCGATT
TACGCAAGCG AAGCGCCGTC GGATACTCAT CTAGAATTGC TGCTCTGTAA GGGATTTTAT
TTACAAGAAA CCAAGTTATT CGATGCCGCT CTTGTGGATT ATAACAAAGG CGTAAAAGAA
GCTTATCAAC TTGAAAATCC AAAATTAATT GCCGACGCCT TAAGTCTTAG AGGCTCAATG
CTGTCCTTTC AAGGCGAGTT TGCCACCGCC CTTGAAGATC TGATCACTGC ACAACATCTC
TATGAAAATC TTAATCTCAC CTATTGGGCT AATAACAACT TACATCAGCT TGCCACCAGT
TATCGCCGTC TGGGGGACCC TCAGGGTGCA TTAAGCTATT TACTAAAGCT AGAACAGTCT
TATTTAGATA ACCACAATCC AGATGAAGCC ATGGATACCA ATTTGCAGAT TGCTTTTGCC
TTGGAAGAGC TAGAACAACA CAGCCAGGCA CTGGAGAAAT ACCAAAGCAG TTATCAATAT
TGGAAGAACA AGAATAACCC ACTATTCCAG CATATAATCT CGGTCCATTT AGCGGGCAAC
CTAATTAAGT TAGGTCGGGT GGATGAGGCT CTATCTTACC TATTAACAGC AAAAGAATAC
CTTAAGATTG AAGAAGATAA TGCCTTTAGC TTTATGCATT TACATTTTTC ACAAGCCTAT
TTAATCAAGA ATGAACCACA AAAAGCGTTA GAACACTTAG CATTAGCAGA ACCGGCGTTT
AAAATAAGTA ATAATCACAG AGGGTTAATC GAGCTCTATA ATCAGCGAGC ATTGGTTCTG
GCAGACTTAA ATCAGTGGCA GCAAGCTTAC CTTGCACTCA GTCATTATAC CGAGCTGCAT
CTTGAACAAG ATAAAAGCAG TATGTCGATG CGCACCACCG AGATGCGCAC CCGCTTTGAC
GTGAATAAAA TCGAAAAAGA AAACAGCTTA CTAATTGAAA AACAAAAACA AAAAGAAATA
ACACTCCAAG CATTGACCCG CAATGAGTCT CTGCAGAACA TCATTATCGT ATTAGTGGGT
CTGATCTTAT TGATAGTGTC AGTGTTCGCT TATGTGCAGC TAAAACGTAA GGTGCGCTTT
AAGCAACTCG CCCTTACCGA TGAGCTCACC AAACTCGCCA ATCGCAGGCA TTGTTATGCC
AAAGCAAACA CCAGCCTAAA ACACGCCATC AAACACAGAA TTCCATTTGC GATAATTTCA
TTTGATATAG ACCATTTCAA ACGGGTTAAC GATCAATGGG GCCACGATGT GGGAGATAAA
GTCCTGATCA CTATGGCTGG TATTTGCACT AACCTGATGC GCAAGAGTGA CATCATAGGT
CGTGTCGGTG GAGAGGAATT TCTTGTGGTT CTGCCTAACG CCAATAAGGA ACAAGCCTTA
GAAATCGCTG AGCGTATTGT CACTAGTGTC GCCCAGGCCC AGTGGCAACA CTTGACGCCA
GACACGCCTC AAACCATCAG TGCTGGTGTC ACGAGTTTAA CCAACGAAAC GTCTTTAGCC
CAGTTGCTGC TTAAGGCCGA TCAAGGGTTA TATTCGGCCA AATCTGCAGG ACGCAACTGT
GTTAGGCAGG TATAA
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| Protein sequence | MCFAWQSDDR VDALFKILDD GGSATTQEIG GYLMELENLI PADDIKRQKK LLTLKCWNQD
SDNEAKKNLA VKFAIEQESI YASEAPSDTH LELLLCKGFY LQETKLFDAA LVDYNKGVKE
AYQLENPKLI ADALSLRGSM LSFQGEFATA LEDLITAQHL YENLNLTYWA NNNLHQLATS
YRRLGDPQGA LSYLLKLEQS YLDNHNPDEA MDTNLQIAFA LEELEQHSQA LEKYQSSYQY
WKNKNNPLFQ HIISVHLAGN LIKLGRVDEA LSYLLTAKEY LKIEEDNAFS FMHLHFSQAY
LIKNEPQKAL EHLALAEPAF KISNNHRGLI ELYNQRALVL ADLNQWQQAY LALSHYTELH
LEQDKSSMSM RTTEMRTRFD VNKIEKENSL LIEKQKQKEI TLQALTRNES LQNIIIVLVG
LILLIVSVFA YVQLKRKVRF KQLALTDELT KLANRRHCYA KANTSLKHAI KHRIPFAIIS
FDIDHFKRVN DQWGHDVGDK VLITMAGICT NLMRKSDIIG RVGGEEFLVV LPNANKEQAL
EIAERIVTSV AQAQWQHLTP DTPQTISAGV TSLTNETSLA QLLLKADQGL YSAKSAGRNC
VRQV
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