| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0699 |
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| Symbol | |
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| ID | 4016900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 805961 |
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| End bp | 807661 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954684 |
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| Product | spermidine synthase |
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| Protein accession | YP_561712 |
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| Protein GI | 91792061 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000065174 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGTTAG GGTTAAAAAA CAATAAAACC ACGGGTATTT CATGGCTGGA TGATGCGCTG
TTATTAGGCA TAATGGCGTC ATTGGCTGCC TGTGGTTTGA TCTATGAATA CCTGTTATCT
CATTATGCTG GGCGTATTTT AGGGGCCCTT GAAGCCGCAA TTTACACCAT GATTGGCTTG
ATGATTGTCT CCATGGGTTT TGGCGCCTTT GCGGCGCGTA AAATTCGCTG CGCCTTCACA
GGTTTTGTGG TGCTCGAGCT ACTCGTCGCC TTATGTGGCT CCCTTGCTAT CATAATCACA
GCGGCGGTCA TAGGTTTTGG TCAGCAATTT CCTTTGATGT TGGCCAATAC CTTAGGCCTG
CCCGCCGATC ACCTCCCCGA TGGCGGCTTT ATTGCCAAGC TGCAAAACCT AAGTGAATAT
TTACCCTATT TATGGGGGCT TATTCTCGGT TTAATGATTG GCATGGAAAT CCCCTTGATT
GCTCGGGTAC GTCAATCTTT ATCAGAGGCA CATTTGCTCC ACAATGCGGG CACTATTTAT
GGCGCCGATT ATCTCGGAGC AGGTATTGGC GCTGCCATCT GGGTCGCGTT TATGCTGGCC
ATAGATATTC AGCTCGCAGC AGCGCTCACC GCCAGTGTGA ACCTGTTAGC AGGGCTAGTA
TTTATCTGGC GCTTTTGGGA GCAAATTGTT CGAGTCAGAC TCTTACTGGC ACTGCACTTC
GTGGTGGGAC TCATCTTAAT TCTGTTGGCT TGGCAAGGGC CAAGTTGGGA GCAAGACTTT
AATAACTTAC TCTATAAAGA TAAGGTGGTT TACGCTAAAG CCACCCGTTT CCAGCAGCTC
AATATTACCG AGCGCCTTCG AGGCCAAGGC TTGGCGCCAG TGTATTCGCT GTACATCAAT
GGCCGGCTGC AGTTTTCCAG TAGCGATGAG CACATCTACC ACAGCTTTTT AGTCCACCCG
ACATTAGCCG CCAGTGCGCG GCAGCAAAAA GTACTCATCA TTGGCGGCGG CGATGGCTTA
GGCTTAAAGC AAGTGCTTAA GTGGCAACCA GAACAAGTCG TCTTGATGGA TTTAGACAAA
GATTTAGTCC AGCTGTTTAA ACAAGCTCCA GAAGATATGC CAAATGCCCT AGCCCGTGAG
CTTAAGCGGC TTAATGGGGA TGCCTTAAAC GATCCTAGGG TTGAAATCCT CTTCGATGAT
GCCTTTAACG GTGTCGATAA ACTGATTGCC AGAGAGTTAA GCTTCGATGC CATCATTGTC
GACTTGCCAG ACCCAAGCCA TCCTGATCTA AACAAGCTAT ATTCCGACTT TTTCTATCGA
AAGCTCAACG AATTGCTGAG CGCCGATGGC GCCATTACCG TGCAGTCGAC CTCGCCCTAT
CATGCCCCCC ACGCGTTTAT TTCAGTGGGT AAAACCATGG CATCGGCAGG TTTTGATGTG
CAGCAGTATC ATCACAATGT CCCAAGTTTT GGCGAATGGG GCTGGTCCAT GGCGACGAAA
TCTGGCGATA GCCCTAAGCA AAGGTTGACC AAACACCTTA ACTTACCCGC TGATGAAACT
TGGTTAACAC CAGGATTGAT CTTGGGGGCT TTTGAATTCC CCGGTGATTT TTACCGTGAA
AAAGATGAAA TAAAAATAAA CAAACTCAAT TCATTACAGC TTTATCAGTA CCATTTAGCC
GACTGGTCAG AGAATCGATA A
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| Protein sequence | MALGLKNNKT TGISWLDDAL LLGIMASLAA CGLIYEYLLS HYAGRILGAL EAAIYTMIGL
MIVSMGFGAF AARKIRCAFT GFVVLELLVA LCGSLAIIIT AAVIGFGQQF PLMLANTLGL
PADHLPDGGF IAKLQNLSEY LPYLWGLILG LMIGMEIPLI ARVRQSLSEA HLLHNAGTIY
GADYLGAGIG AAIWVAFMLA IDIQLAAALT ASVNLLAGLV FIWRFWEQIV RVRLLLALHF
VVGLILILLA WQGPSWEQDF NNLLYKDKVV YAKATRFQQL NITERLRGQG LAPVYSLYIN
GRLQFSSSDE HIYHSFLVHP TLAASARQQK VLIIGGGDGL GLKQVLKWQP EQVVLMDLDK
DLVQLFKQAP EDMPNALARE LKRLNGDALN DPRVEILFDD AFNGVDKLIA RELSFDAIIV
DLPDPSHPDL NKLYSDFFYR KLNELLSADG AITVQSTSPY HAPHAFISVG KTMASAGFDV
QQYHHNVPSF GEWGWSMATK SGDSPKQRLT KHLNLPADET WLTPGLILGA FEFPGDFYRE
KDEIKINKLN SLQLYQYHLA DWSENR
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