| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0471 |
|---|
| Symbol | |
|---|
| ID | 4016654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 541895 |
|---|
| End bp | 543745 |
|---|
| Gene Length | 1851 bp |
|---|
| Protein Length | 616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637954457 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_561486 |
|---|
| Protein GI | 91791835 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAGC AGATATTAAC CGCAACACTG ATCAGCCTGA TGCCCATGTG TCTATCAGCC
AATGATAGCT GGCAGCAAAG CAGCGACTGG CAGGCATTAG AGCAAGAAAT TGATACCCTA
AGACAAGAAC AAGGCATTGC CTTAGCAAGC TCGGCGGCCG ACAGGGATGG CATATTATGG
CAATACACTA AGGGCCCTAT TAATGCTAAT AATAACAACC AAATAGATGC TGACAGCCTA
TTTCGCGCAG GCTCAGTGAC TAAAGTATTT ACCGCCATTG GGGTTTTACA GCTTATGGAG
CAAGGCAAAC TCAAGCTCGA TGACCCTGTA AGTTTGCATT TACCCAATGT GATTATTGAC
AACCCTTGGG CCGAGACAGA TCCTGTTCGT GTAAAAGATC TCTTGTCCCA TACAGCCGGC
TTTCGTGATG CCGGTGTCAC TGAACTCTAT GTAGAGAAAG CTGATGCCAG CGCCCCTCTT
AGTCAAGTTA TCAATAAGTA CCAGCTCCAA GTCCGCTGGC GCCCTGGGAC TCGCCAGGCT
TATTCGAATT TTGGCTATCT TATCGCGGGT CATCTAATCG AGCAGCTTTC TGGCGAGCCT
TTTGAAGCAC GCCTAAATCA CACCATATTG CAACCACTTA AGATGGACAG CTCGAATTTC
TCACAGCAAG AGGAGGTATT AAGTACTTTA GTAGCAGGTC ATGGGTCAGC GCTCACTGGC
GGCAAAGATA AGGTTCCAGC CATGCCTATC TCTGTGCGGC CCGCTGGCAG CTTGGTCACT
AGCCTAAACG ACCTTACCCG CTTTAGTCGC ATGCTGTTAA ATGAAGGCGA GCTCGACGGT
GCGCGCATTA TCAGTAAAGC CAGCTTTGAT GTAATGCTCA CCAGTGCCAT GGATAAAAAC
AGTGGGCTTC ACCAAGCAGC CTACGGCTTA GGTCTGTACC CTGTCAGCAG AGAAAGTGGC
CGTTATTTTT GTCACTCAGG CGGTATCGAT GGGTTTCTCT CTAATATTTG CTTTTCTAAG
CAGCAAAACA TGACCTTTGT CGCCCTAAGC AACGCCATGA CTTTATCCGG GGGCCAAGTG
TTTAATAAGG CACTGCCTTT TCTTGCCAAG GCGCAATTAC CCGAAGTTCA GCCGCTTGAT
TTTGATATCA AGCCTTGGTT AGGTTTTTAT CGCCCACAGA GTTCACGCCA ACAGAGCATG
GCAAGCATGG ATAGCCTAAT GAAAGGCAGT ACACTTAGCT TTGAAGAAGG CAGTTTAACG
ATTAAACCCT TATTTGGCAG TGCTGATAAG TATGTCTATG TGGCTGAGCA AGGCTTTCGC
CCTGTGGATA AGGCTGCGGT CACTTTAACC TTAGTGTTAG ATAGCCAAGG GCAGCCAATG
ATACAGGAAA GCTGGGAGAC CTACCTGCCA GACAATAGCT GGTACGCGTC AATGCTCAAT
TATACTTTTC TCACCTTTGC CATCATCTTA TTAGTCACCA GTGTGAGTGC CCTGCTGTTG
GCCATCTATC TCCTTATCCG TAAGTCATTA GGTAAAAACA TTAGCAGTAA TCCTAAACTC
GCTTTAGCGC TACTGCTGCT ACCGATAACT TTATTTGGTC TGTACCTGTT TTTCACTCAG
CTTGCTATGT GGGAGCTCAA CCATGTGACA TTTGCGGCGC TAATCTTGTG GCTACTCAGT
TGGAGCTGGC CAGTCGGCAT CGCTTACTTT AGCTGGCTGG TATGGCAGGA GCGTAGCAAG
TTAATCCTTA AACGTTCGAA AGCCTTTTGG GGATTAGCCT TAACCAGCCA ATGGGTGATG
GCACTTTACC TAGTTCACTT TGGTGCCTAC AACATGATGT TGTGGTCATA A
|
|---|
| Protein sequence | MLKQILTATL ISLMPMCLSA NDSWQQSSDW QALEQEIDTL RQEQGIALAS SAADRDGILW
QYTKGPINAN NNNQIDADSL FRAGSVTKVF TAIGVLQLME QGKLKLDDPV SLHLPNVIID
NPWAETDPVR VKDLLSHTAG FRDAGVTELY VEKADASAPL SQVINKYQLQ VRWRPGTRQA
YSNFGYLIAG HLIEQLSGEP FEARLNHTIL QPLKMDSSNF SQQEEVLSTL VAGHGSALTG
GKDKVPAMPI SVRPAGSLVT SLNDLTRFSR MLLNEGELDG ARIISKASFD VMLTSAMDKN
SGLHQAAYGL GLYPVSRESG RYFCHSGGID GFLSNICFSK QQNMTFVALS NAMTLSGGQV
FNKALPFLAK AQLPEVQPLD FDIKPWLGFY RPQSSRQQSM ASMDSLMKGS TLSFEEGSLT
IKPLFGSADK YVYVAEQGFR PVDKAAVTLT LVLDSQGQPM IQESWETYLP DNSWYASMLN
YTFLTFAIIL LVTSVSALLL AIYLLIRKSL GKNISSNPKL ALALLLLPIT LFGLYLFFTQ
LAMWELNHVT FAALILWLLS WSWPVGIAYF SWLVWQERSK LILKRSKAFW GLALTSQWVM
ALYLVHFGAY NMMLWS
|
|---|
| |