Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0453 |
Symbol | |
ID | 4017224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 523412 |
End bp | 525337 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637954439 |
Product | GGDEF domain-containing protein |
Protein accession | YP_561468 |
Protein GI | 91791817 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCTTA ACTCGGGACG CAGAGTCAGT AGCAGAACCC TAAAACTACT CCCGCTATTA TCACTATTAT TACTATTGAA TGTGGTTATG GTGGGCATGT CTTATGCGGC TGAGCACAGA CCGACCCCGT TAAGGATCAC CGCAACCTCA ATAACAAAAA TTGACCTCGC CGATTGGCTG TATATCAATA CCGCAACCCA GGCTGAACAG CTTAGTCAAG TAAGGCAGTC GACCGCTGAT CAATGGCGTA AGTATAAGCC TACGGATCTG CGTTATATTG GCGCTAAAAA TATCTGGGTA AGCTTTAGTC TTTATAATCC CAATGATAAC TTGTCCCGTA TCATCGCTTT AGACAATCCA TTATTAGACA GTGTCGAGTT ATATCACCTT ATCGATAATC GGGTACAAAA AGTCACTCAC ATGGGTGATA GTCTACCCTT TTATCAAAGA CCTTTACTGA GCAATATTTT TCTCTACCCT ATCGAACTTG AACCTAACGA GCTGCACACC TTTTATCTAA AAGTGAACAC CAAGGGCAGC ATTAATTTGC CGCTAGTCTT GTGGTCCGCC AATGATTTAA CCCAAGAATC CGAAGCCCAA GGCCTCACCC ATGGTTTACA AATAGGCATA CTCGTGGCCA TCGGCCTATT TAGTTTGTTT ATTGCCTTAG CTTCTGGCTC ATTTAGCTAC AGCTACTACA GCGTCTATGT GATGGCGCTC ACCTTGCTGG TCGCCAGTGT ACATGGCGTC GCGTTTCGCT ATCTGTGGCC GCAATTCCCT AGCATACAAC AATATGTTAT CCCCTTTACC ATCCCCATTA TCTTGGCTTT CTCATTGCTA TTTACCGAGA AGGTGTTGCA GCTTAAATAT CACAGTTTGC CTATGCTGCG CTGTTGCCGT GTCTTAGTCA GTTACTCTTT TGTGTTGTGC CTGCTGGTAC CCCTTATTCC TTATGATATT TTATTGTATT TGCTGGTGCT GTCGGTATTT TTAATCTCAC TTATTCTGCT GGCTTTCTCT GCTATTCAGG CCATTCGCGG GCAAAAAAAT GCCCGCCTTT ATACCTTGGG GCGTTTTGGA TTATTAATCG GCACTATACT CAGCGGGCTG ATTTACTTGG GACTTATCAA TCTTAATATC ATGCCGCAAA CTCCGGTAAT GATAGGGCTG ACTTTTGAAG TTGTAGTGAT GGCTTCAGTG CTCGCCATGC GCTACAGCGA TGAGCGTAAA GCCAAGCAGA AAATCCAACA AGAAACCTTA GAGCAAGCCG AACGCATTCG AGAGACCCGA GAAGAAGCCC TTCGAGCGGA AGCCGAAGCC AATGCTAAAC TCGAGCAAAT GGTGCAAGAA CGCACCTTAG AGTTAGAAAT AACCTTAAGA GAACTTAACG ACGTCAATCA AAAACTGCTA GAGCAAACCA CCTTAGACAG CCTCACTGGG GTTAAGAATC GCAATGCTTT CGATAAAAGG TTGGTGGCAG AAGGCCGCAT AAGCCGCAGG CAACAGACGC CGATGGCTAT TCTGATGCTA GATATCGATA AGTTTAAATC CATCAATGAT GAATTTGGCC ATTTAGGTGG TGACCACTGT ATCCAAAGTA TTGCTAAAGT GCTGACAGAA CAACTTAAAC GACCAACAGA TCTAGTATCC CGTTTTGGTG GTGAAGAGTT TGCCATTATT TTACCCAACA CAGACTTAGA TGGTGCCATG ATCGTGGCCG AAACAGTCAG GGCCAGCATA GATGAATTAC AGCTGGTGTG GGATGAAAAG CCCATGAAAA TCAGCGCCAG TTTAGGCGTC AGCGCCGCCG TCATCGAAAG CGATGAACAC CCCATAGAGC TTCTCGAATT AGCCGACAAA GCCTTATACC AAGCAAAACG TAATGGCCGT AATCGGATCG AGCAAGCTAT CATAGAAAAC GCCTAG
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Protein sequence | MSLNSGRRVS SRTLKLLPLL SLLLLLNVVM VGMSYAAEHR PTPLRITATS ITKIDLADWL YINTATQAEQ LSQVRQSTAD QWRKYKPTDL RYIGAKNIWV SFSLYNPNDN LSRIIALDNP LLDSVELYHL IDNRVQKVTH MGDSLPFYQR PLLSNIFLYP IELEPNELHT FYLKVNTKGS INLPLVLWSA NDLTQESEAQ GLTHGLQIGI LVAIGLFSLF IALASGSFSY SYYSVYVMAL TLLVASVHGV AFRYLWPQFP SIQQYVIPFT IPIILAFSLL FTEKVLQLKY HSLPMLRCCR VLVSYSFVLC LLVPLIPYDI LLYLLVLSVF LISLILLAFS AIQAIRGQKN ARLYTLGRFG LLIGTILSGL IYLGLINLNI MPQTPVMIGL TFEVVVMASV LAMRYSDERK AKQKIQQETL EQAERIRETR EEALRAEAEA NAKLEQMVQE RTLELEITLR ELNDVNQKLL EQTTLDSLTG VKNRNAFDKR LVAEGRISRR QQTPMAILML DIDKFKSIND EFGHLGGDHC IQSIAKVLTE QLKRPTDLVS RFGGEEFAII LPNTDLDGAM IVAETVRASI DELQLVWDEK PMKISASLGV SAAVIESDEH PIELLELADK ALYQAKRNGR NRIEQAIIEN A
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