| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0453 |
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| Symbol | |
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| ID | 4017224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 523412 |
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| End bp | 525337 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637954439 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561468 |
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| Protein GI | 91791817 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTTA ACTCGGGACG CAGAGTCAGT AGCAGAACCC TAAAACTACT CCCGCTATTA
TCACTATTAT TACTATTGAA TGTGGTTATG GTGGGCATGT CTTATGCGGC TGAGCACAGA
CCGACCCCGT TAAGGATCAC CGCAACCTCA ATAACAAAAA TTGACCTCGC CGATTGGCTG
TATATCAATA CCGCAACCCA GGCTGAACAG CTTAGTCAAG TAAGGCAGTC GACCGCTGAT
CAATGGCGTA AGTATAAGCC TACGGATCTG CGTTATATTG GCGCTAAAAA TATCTGGGTA
AGCTTTAGTC TTTATAATCC CAATGATAAC TTGTCCCGTA TCATCGCTTT AGACAATCCA
TTATTAGACA GTGTCGAGTT ATATCACCTT ATCGATAATC GGGTACAAAA AGTCACTCAC
ATGGGTGATA GTCTACCCTT TTATCAAAGA CCTTTACTGA GCAATATTTT TCTCTACCCT
ATCGAACTTG AACCTAACGA GCTGCACACC TTTTATCTAA AAGTGAACAC CAAGGGCAGC
ATTAATTTGC CGCTAGTCTT GTGGTCCGCC AATGATTTAA CCCAAGAATC CGAAGCCCAA
GGCCTCACCC ATGGTTTACA AATAGGCATA CTCGTGGCCA TCGGCCTATT TAGTTTGTTT
ATTGCCTTAG CTTCTGGCTC ATTTAGCTAC AGCTACTACA GCGTCTATGT GATGGCGCTC
ACCTTGCTGG TCGCCAGTGT ACATGGCGTC GCGTTTCGCT ATCTGTGGCC GCAATTCCCT
AGCATACAAC AATATGTTAT CCCCTTTACC ATCCCCATTA TCTTGGCTTT CTCATTGCTA
TTTACCGAGA AGGTGTTGCA GCTTAAATAT CACAGTTTGC CTATGCTGCG CTGTTGCCGT
GTCTTAGTCA GTTACTCTTT TGTGTTGTGC CTGCTGGTAC CCCTTATTCC TTATGATATT
TTATTGTATT TGCTGGTGCT GTCGGTATTT TTAATCTCAC TTATTCTGCT GGCTTTCTCT
GCTATTCAGG CCATTCGCGG GCAAAAAAAT GCCCGCCTTT ATACCTTGGG GCGTTTTGGA
TTATTAATCG GCACTATACT CAGCGGGCTG ATTTACTTGG GACTTATCAA TCTTAATATC
ATGCCGCAAA CTCCGGTAAT GATAGGGCTG ACTTTTGAAG TTGTAGTGAT GGCTTCAGTG
CTCGCCATGC GCTACAGCGA TGAGCGTAAA GCCAAGCAGA AAATCCAACA AGAAACCTTA
GAGCAAGCCG AACGCATTCG AGAGACCCGA GAAGAAGCCC TTCGAGCGGA AGCCGAAGCC
AATGCTAAAC TCGAGCAAAT GGTGCAAGAA CGCACCTTAG AGTTAGAAAT AACCTTAAGA
GAACTTAACG ACGTCAATCA AAAACTGCTA GAGCAAACCA CCTTAGACAG CCTCACTGGG
GTTAAGAATC GCAATGCTTT CGATAAAAGG TTGGTGGCAG AAGGCCGCAT AAGCCGCAGG
CAACAGACGC CGATGGCTAT TCTGATGCTA GATATCGATA AGTTTAAATC CATCAATGAT
GAATTTGGCC ATTTAGGTGG TGACCACTGT ATCCAAAGTA TTGCTAAAGT GCTGACAGAA
CAACTTAAAC GACCAACAGA TCTAGTATCC CGTTTTGGTG GTGAAGAGTT TGCCATTATT
TTACCCAACA CAGACTTAGA TGGTGCCATG ATCGTGGCCG AAACAGTCAG GGCCAGCATA
GATGAATTAC AGCTGGTGTG GGATGAAAAG CCCATGAAAA TCAGCGCCAG TTTAGGCGTC
AGCGCCGCCG TCATCGAAAG CGATGAACAC CCCATAGAGC TTCTCGAATT AGCCGACAAA
GCCTTATACC AAGCAAAACG TAATGGCCGT AATCGGATCG AGCAAGCTAT CATAGAAAAC
GCCTAG
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| Protein sequence | MSLNSGRRVS SRTLKLLPLL SLLLLLNVVM VGMSYAAEHR PTPLRITATS ITKIDLADWL
YINTATQAEQ LSQVRQSTAD QWRKYKPTDL RYIGAKNIWV SFSLYNPNDN LSRIIALDNP
LLDSVELYHL IDNRVQKVTH MGDSLPFYQR PLLSNIFLYP IELEPNELHT FYLKVNTKGS
INLPLVLWSA NDLTQESEAQ GLTHGLQIGI LVAIGLFSLF IALASGSFSY SYYSVYVMAL
TLLVASVHGV AFRYLWPQFP SIQQYVIPFT IPIILAFSLL FTEKVLQLKY HSLPMLRCCR
VLVSYSFVLC LLVPLIPYDI LLYLLVLSVF LISLILLAFS AIQAIRGQKN ARLYTLGRFG
LLIGTILSGL IYLGLINLNI MPQTPVMIGL TFEVVVMASV LAMRYSDERK AKQKIQQETL
EQAERIRETR EEALRAEAEA NAKLEQMVQE RTLELEITLR ELNDVNQKLL EQTTLDSLTG
VKNRNAFDKR LVAEGRISRR QQTPMAILML DIDKFKSIND EFGHLGGDHC IQSIAKVLTE
QLKRPTDLVS RFGGEEFAII LPNTDLDGAM IVAETVRASI DELQLVWDEK PMKISASLGV
SAAVIESDEH PIELLELADK ALYQAKRNGR NRIEQAIIEN A
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