Gene Sden_0453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0453 
Symbol 
ID4017224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp523412 
End bp525337 
Gene Length1926 bp 
Protein Length641 aa 
Translation table11 
GC content45% 
IMG OID637954439 
ProductGGDEF domain-containing protein 
Protein accessionYP_561468 
Protein GI91791817 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCTTA ACTCGGGACG CAGAGTCAGT AGCAGAACCC TAAAACTACT CCCGCTATTA 
TCACTATTAT TACTATTGAA TGTGGTTATG GTGGGCATGT CTTATGCGGC TGAGCACAGA
CCGACCCCGT TAAGGATCAC CGCAACCTCA ATAACAAAAA TTGACCTCGC CGATTGGCTG
TATATCAATA CCGCAACCCA GGCTGAACAG CTTAGTCAAG TAAGGCAGTC GACCGCTGAT
CAATGGCGTA AGTATAAGCC TACGGATCTG CGTTATATTG GCGCTAAAAA TATCTGGGTA
AGCTTTAGTC TTTATAATCC CAATGATAAC TTGTCCCGTA TCATCGCTTT AGACAATCCA
TTATTAGACA GTGTCGAGTT ATATCACCTT ATCGATAATC GGGTACAAAA AGTCACTCAC
ATGGGTGATA GTCTACCCTT TTATCAAAGA CCTTTACTGA GCAATATTTT TCTCTACCCT
ATCGAACTTG AACCTAACGA GCTGCACACC TTTTATCTAA AAGTGAACAC CAAGGGCAGC
ATTAATTTGC CGCTAGTCTT GTGGTCCGCC AATGATTTAA CCCAAGAATC CGAAGCCCAA
GGCCTCACCC ATGGTTTACA AATAGGCATA CTCGTGGCCA TCGGCCTATT TAGTTTGTTT
ATTGCCTTAG CTTCTGGCTC ATTTAGCTAC AGCTACTACA GCGTCTATGT GATGGCGCTC
ACCTTGCTGG TCGCCAGTGT ACATGGCGTC GCGTTTCGCT ATCTGTGGCC GCAATTCCCT
AGCATACAAC AATATGTTAT CCCCTTTACC ATCCCCATTA TCTTGGCTTT CTCATTGCTA
TTTACCGAGA AGGTGTTGCA GCTTAAATAT CACAGTTTGC CTATGCTGCG CTGTTGCCGT
GTCTTAGTCA GTTACTCTTT TGTGTTGTGC CTGCTGGTAC CCCTTATTCC TTATGATATT
TTATTGTATT TGCTGGTGCT GTCGGTATTT TTAATCTCAC TTATTCTGCT GGCTTTCTCT
GCTATTCAGG CCATTCGCGG GCAAAAAAAT GCCCGCCTTT ATACCTTGGG GCGTTTTGGA
TTATTAATCG GCACTATACT CAGCGGGCTG ATTTACTTGG GACTTATCAA TCTTAATATC
ATGCCGCAAA CTCCGGTAAT GATAGGGCTG ACTTTTGAAG TTGTAGTGAT GGCTTCAGTG
CTCGCCATGC GCTACAGCGA TGAGCGTAAA GCCAAGCAGA AAATCCAACA AGAAACCTTA
GAGCAAGCCG AACGCATTCG AGAGACCCGA GAAGAAGCCC TTCGAGCGGA AGCCGAAGCC
AATGCTAAAC TCGAGCAAAT GGTGCAAGAA CGCACCTTAG AGTTAGAAAT AACCTTAAGA
GAACTTAACG ACGTCAATCA AAAACTGCTA GAGCAAACCA CCTTAGACAG CCTCACTGGG
GTTAAGAATC GCAATGCTTT CGATAAAAGG TTGGTGGCAG AAGGCCGCAT AAGCCGCAGG
CAACAGACGC CGATGGCTAT TCTGATGCTA GATATCGATA AGTTTAAATC CATCAATGAT
GAATTTGGCC ATTTAGGTGG TGACCACTGT ATCCAAAGTA TTGCTAAAGT GCTGACAGAA
CAACTTAAAC GACCAACAGA TCTAGTATCC CGTTTTGGTG GTGAAGAGTT TGCCATTATT
TTACCCAACA CAGACTTAGA TGGTGCCATG ATCGTGGCCG AAACAGTCAG GGCCAGCATA
GATGAATTAC AGCTGGTGTG GGATGAAAAG CCCATGAAAA TCAGCGCCAG TTTAGGCGTC
AGCGCCGCCG TCATCGAAAG CGATGAACAC CCCATAGAGC TTCTCGAATT AGCCGACAAA
GCCTTATACC AAGCAAAACG TAATGGCCGT AATCGGATCG AGCAAGCTAT CATAGAAAAC
GCCTAG
 
Protein sequence
MSLNSGRRVS SRTLKLLPLL SLLLLLNVVM VGMSYAAEHR PTPLRITATS ITKIDLADWL 
YINTATQAEQ LSQVRQSTAD QWRKYKPTDL RYIGAKNIWV SFSLYNPNDN LSRIIALDNP
LLDSVELYHL IDNRVQKVTH MGDSLPFYQR PLLSNIFLYP IELEPNELHT FYLKVNTKGS
INLPLVLWSA NDLTQESEAQ GLTHGLQIGI LVAIGLFSLF IALASGSFSY SYYSVYVMAL
TLLVASVHGV AFRYLWPQFP SIQQYVIPFT IPIILAFSLL FTEKVLQLKY HSLPMLRCCR
VLVSYSFVLC LLVPLIPYDI LLYLLVLSVF LISLILLAFS AIQAIRGQKN ARLYTLGRFG
LLIGTILSGL IYLGLINLNI MPQTPVMIGL TFEVVVMASV LAMRYSDERK AKQKIQQETL
EQAERIRETR EEALRAEAEA NAKLEQMVQE RTLELEITLR ELNDVNQKLL EQTTLDSLTG
VKNRNAFDKR LVAEGRISRR QQTPMAILML DIDKFKSIND EFGHLGGDHC IQSIAKVLTE
QLKRPTDLVS RFGGEEFAII LPNTDLDGAM IVAETVRASI DELQLVWDEK PMKISASLGV
SAAVIESDEH PIELLELADK ALYQAKRNGR NRIEQAIIEN A