| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0245 |
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| Symbol | |
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| ID | 4017992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 279756 |
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| End bp | 281009 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637954227 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561264 |
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| Protein GI | 91791613 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCCT CGATACTTAC CTTGGCGATC GCTTTTTTTT GGAGAACGTT TTTGAGCAGC
TTCTATCATT CTTGCCGTTA TCTAGTCATG CCTATATTAT TGACGGCGGT ATTGCTTGGA
TTAATTGAAC ACTTTCAAAA CCAATGGCTT AACTGGCAGC AAACCATAGA ACAAATGCCA
TACTGGCTAT TGGGCTGTGC GACTATTATT GCGTTGCAAT TTAACCGTAG TCGACTCAGT
TATATTGGCG TGTTGTTGTT AAGTTTTTAT GCCCTAAGTC AAAATTCAGG TTTTGATCCC
AAAGAAAATG AATTAATTTT AATTAGCGGC GGTTTAATTA TTGCCGTTTT CAGCTTTATC
AAAGACCGTG GCCTTATCAG TGTGCACAGT TTATTGAGGC TGGGAGTGAT CTTAGGCTGC
TTTTTAACCG CTTATTTATG GATACTGGTA TTGAGTCATT TTTCACAGCA AATGTTGAGT
CTGCATCAAA ATTACCTGCC ATTTTTGTCC GCCAGTCACT TCTCAAGATT ACCGCTTTAT
CCCATAGGCT TAATTTTACT CATCAAATTA AGCTTGCAAA GCAGCCTACT GCAGACCAGC
TTAGGTGTAA CTTTCTTGCT GTGGGTACTG CATTTCAGTG CGCCTAATTG GCTACCCTTA
GCCGTACAGC TCAATGTTAT CGCCTTATTC TTCCTCGCCA CAGTAATCAT TGACTCCTAC
TTTCTTGCCT ACCGTGATGA GCTGACAGGA TTACCCTCTA GACGCGCCTT ATTTAATTTA
AGCCTCTCCT TGGGGCGTAA ATACAGTGTC GCCATGGTAG ATATCGATCA CTTTAAAAAA
TTCAATGACA CCTACGGTCA TGATGTTGGC GATCAGGTGC TCAAGTTAGT GGCTGCAAAA
CTCGCCCAAG TGACCGGTGG CGGTAAAGCC TTTCGTTACG GCGGTGAAGA GTTCACCATA
GTGTTCCCAA GAAAAGAAGT TAAACGCGTT TTCCCGCATT TAGATGATGT CAGAGAAAGT
GTAGAAGAAT ACGAAATCGT ATTAAGGGAA GAGAAGCGTA AGGGTAAAGA AGATAAACAA
GCCAGTAAAA AACGCACTAA AAAAGCACCA GCGAAACAAC GCACTGTGAG TGTCACCGTC
TCGATAGGTT GTGCCCAACA TCAAGCAGAC CAAAGCTTTG AGCAATGCAT GAAAGAAGCC
GATAAAGCAT TATACAAAGC CAAAGAGCGG GGTCGAAATC AAGTGTGTAG TTAA
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| Protein sequence | MSASILTLAI AFFWRTFLSS FYHSCRYLVM PILLTAVLLG LIEHFQNQWL NWQQTIEQMP
YWLLGCATII ALQFNRSRLS YIGVLLLSFY ALSQNSGFDP KENELILISG GLIIAVFSFI
KDRGLISVHS LLRLGVILGC FLTAYLWILV LSHFSQQMLS LHQNYLPFLS ASHFSRLPLY
PIGLILLIKL SLQSSLLQTS LGVTFLLWVL HFSAPNWLPL AVQLNVIALF FLATVIIDSY
FLAYRDELTG LPSRRALFNL SLSLGRKYSV AMVDIDHFKK FNDTYGHDVG DQVLKLVAAK
LAQVTGGGKA FRYGGEEFTI VFPRKEVKRV FPHLDDVRES VEEYEIVLRE EKRKGKEDKQ
ASKKRTKKAP AKQRTVSVTV SIGCAQHQAD QSFEQCMKEA DKALYKAKER GRNQVCS
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