| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0132 |
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| Symbol | |
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| ID | 4020379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 142525 |
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| End bp | 146793 |
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| Gene Length | 4269 bp |
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| Protein Length | 1422 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637954105 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_561152 |
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| Protein GI | 91791501 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAATGA TAAAGGGATT TTGTTTGTTT AGCGTGTTCT TTATAACTTT TGGCTTGAAT
GGTGCTGAGT TCAAAGAAGC GATAAAGGGT GAAAATGAAA AAATACATTC TTTGGAAAGT
GGAGGAACAA ATTCTGCTTT AGATAGTTTC GGTGTCAGAC ATGATATCAA TTCAGGTCAA
GTTTACCTAT CTCATACAGA TGTTGATATA CCTGGTAACT CAAAACTTCC AGTCAGGTTT
ACACGTATCA GGTCTGAGCT AGAGCCAAGT AGAAATAGCG GCAATCAGAT GCGAGATTGG
GATGTAGATG TTCCCGTTAT TATGATGAGA ACTGTGACTA GTAGAGAAAA TAGTTATTCA
GGCAACTACA AATATGCAGA ACGGTGGTAT GTCTATCCTG ACAATGCCTG TTCTGAAAAT
TTTCCAATTG GGTATAATGC TGAAGAATAT TTAGGCATGT ATAGGGCTAT AAAATGGCCG
ACACTAAGAG TAAACGGTAT CAGCAAGCCA CTTTATAAAA TTGAGGAGGG AACAGCACCA
TTTCCGGCTG ATACTAAGTT TGTTACAAAA GATAACTGGG TGTCTAAGTG TATTTTCGAT
GAAAATAACC CTAATAAAAA TATTGGATTT CTAGTACAGT CACCTAATGG TGATAAGTAT
ACTTTCGATG TTAGATGGAG AGATAAAGAT CATCCCTATA CACGATATTA TGCTTCAAAA
GTCGAAGACA GTTTTGGTAA CTGGGTTAAG TATGAGTTTA ATAATGGTAT TTTAAAAAGG
ATTGAATCGA ATGATGGTAG AGTAATAACC ATCGCATCAT CGAGAAAAGG TGGGGTATAT
CCCTACATAT TTAGTGATTT TAGTGGATTT AATATATTTT CAATTGACTC TATTACCGCA
AATGACAAAA CTTGGAGTTA TGGTTATGAA AGCAAGAAAA TAATTATTTC AGGTAGCTTG
GGTCGTGTTT CTTGGAGTGT ATCAGATTTT TTGAATTACC TAACATCAGC GAAAGATCCA
GAAGGGTTGA CTTATTCTTA CTTACCTAGT GAAGAATTGG TTGATGATAC GAAAAGAATT
AAAGATACCG TTCCATTTTA TGAAGTAACA AATCCTCTCG GCGCCAAGTT AAGAATGGAC
TTCTCTAAGT ATGATATGTG CAATGGAGTA TTTGTTGAAT TAGGGGTGAT GCTTGAATTC
TCTGATTGTA TATATAATTT TTCTGGTAGC TATAGTGACT TTGACTTTAA TTTAGGGAAA
AAGAACATAC CATTCTTATC AAAAGTTAAA ATATCTGTAT CTGAAAATCA AAGTTATGAT
TGGAGCTATA AAATTACTGA TGGTTTGGTT AATTCTGAGA ATGCCCCTTC ACGTTGGAAT
TGGTCAAAAT CAAATTGGTG GCAAGGCCCA GAATTTCGCG TCATAAAAAC AACGAGTCCA
TCAGGCATAT ATCAAAATAA GTATAACCAG CGACAAGGTA AAAGCTATGG TGAACTGGTT
GAGTCAAAAG TGTACTATGG AAATAGCTGG TCAGTGGTCT CGACTTTTGT CTACGATGAT
CAGGGAATGG CTGGAAACCA TTGCCCATTT TCTGAAAAGC GTTGTGATCA AATTTATGTT
GTAAGCGGTA ATGATCTTGA TGTAGAGAAA ACTTTTCGAC AATTATCAGA GGTTAAACAG
GAACAGGATA GCGTATCTTA TAGTCAAAAA TTTACTTATG ACAGTTATCA TAATTTAAGT
GTAAAAGAAG AATCCACATC TGAAGATGAG AGTGTTAGGT ACAGCCAGTA TACTTATCAT
TATGACCCAT TAAACTGGTA TGTAGGACGA CTAAAAAATA TTAGTATATC TTCAGACAAT
ATAAGCTGGT CTAAAATTTA CAACCTTAAT TTTAATGATT TAAATCTTCC AGAAGAACAG
TTTTCTTATG GGAAAAAGGT GATGGCGTAT AGTTATCACC CTGATGGTAA TGTAAAAAAA
ATAACTTATA CGGGTTCAAA TAATTATGTA TTATTTGATG ATTATTTTCG TGGTGAACCT
AAAAAAGTAA CTATGCCATG TTCTATTGCT AATGCTTGTA ATAAAGTTAA TGGTAGTACT
GTAAATACCA TTGTAGCGAG CAAAGAGATT AACTGGGATG GAACGATAAA AGCAGAAAAA
GATTTCAATG GTAATTCAAC TGCATTTAGT TACAACTCCA TCGGATGGCT AACAGGAGTC
GAATATTCAG ATCCAAAAGT GACGAAGCAA GTTATTACCT TTGATAAAGT AACCAATGCC
GATGATGGAG TATTAGGAAG CGGAATCGTT CTAGGTCAAT TAAGGAAAGT CATTACCCGT
GGTAATTATG AGCAGCGCAG CTATTTTGAT GGATTATTTA GACGTGAATT TACTAGCGTG
AAAGATAAAT CGTCAGAGAA TTCTGTGGTT TATAAAATGT TCGAGTATGA TAGTGATAAT
AGAATAGTGC TTGAATCATT CCCTAGTGCC ATAGCTTCAA ATAATTTAGG GGTTTTTACT
GAGTTCGACT CTCTCGGTAG AACCGAATCC ATAACGCGTA CAACTGATAA TGCTAAACTG
ACTCACGAGT ATCTGGCGAT GAATCAAGTC GTAGTTAAAG ATCCTGAGGG AAATAACGTC
ACTACGAAAT ATTTATCCTA TGGAAAACCT AGCTACGATA AGCCAATTTT AATTCAAGCT
AACGATGCAG AAGATACGGT TATTTCTTAT AGTCTATTTG ATCAGGTTGA TACCATTACT
CAAGGCAATA TAACCGAAAA GCGTTACTAT GATTCCCAGA ATAAATTATG CAAACAAGTA
CGACCTGAAA CTGGACAGAC AGCTTTCAAA TATAATTCAC AAAATCAGCT CGTATGGCGA
GCTGAAGCGA CTGCCGGCGA TCTTAATGCC TGTGATGCAG ATTCTGTTTT AGAAAGTCAT
AAAACTAGGC TCAATTATGA CAATTTAGGT CAACTTCGCA CAGAAGTCTT TCCTGATAAT
ACACCAAGTA AAACCTATAG CTATGATGCC AATGGTAATT TGATATTCTT GCAAGCAGGA
TCTGTCAGCT GGAATTATCT CTATGACAGC CAGAATCGAT TGAAAAATGA AATATTATCT
TTGGATGGAA AGTCTTTTGA ACTCGACTGG ACCTACGATG GTCTAGGATC TGCCAGTTCA
CTTAAGTATC CTTCGGGCAT TATCATTGAT TATGCTCCTA ATGCTTTAGG GCAACCTACC
AAGGCAGGCA GTTATGCTTC AAACGTTAGC TACCATGCCA ATGGTCAAAT TAAGCAATTC
ACTTATGGTA ACGGCATAGT GCGCAATGTG ACCTTAGATA GCACTGGGCG CATGGATTTG
CTCAAAGATA GCAAGAGTGG TGTGTTGAAA ACTAGCCTCG CCCCAAGTTA CGACTACAAC
GATAACTTAG CAAGCTTGAT AGATGGCGTC GATACCGCTA ATAACATTAG TAACTTAGCC
TATGATGGCT TGGATAGGCT TAAATCGGCG GATGGTCGTT GGGGCAAAGG CAGTTACAGC
TACGATGGTT TAGGTAACAT AACAAGCCGC AGTATAAGTG GTGCGGCCAT CAACTACAGT
TATGACAATC TGAATCGTTT AAATAAACTC AACGGTGCCT ATGGTTATAG TTATCAATAT
GATAGCCGTG GCAATGTGTC TCATAATGGC CGTTATGGCT TAACTTTCAA CCGTGCTAAT
CAAGTCAGTG AAGCGAAGGG GATACCTTAT GTGTATGACG GTCACAATCG CCGAGTGAAA
CAAACAAAGC CTGAGGGCAG TCATTACTCC GTTTATAGTA GTGCTGGGCA ATTGTTACAT
CGTAAAGTGG AGCATGGCAG TCATACAGAC AGTGTCTATT TAGGTAAACA ACTTATTGCT
GAGGTTGAAA ACGGTGATAG CTCGCTGGTG ACATCCGATC CATCAGTTGC TAAACCATCA
ATCAACTTTA ATATTACCCA ATATACGGTT GGCAGTAGCT GCCCCCCCAA AATGGTCTGT
GCGACCAATG GTATTACTTA TCACAATATT CGCTGGACGA CGGAAAATGC CACAAGTTGC
ACTGGTAATG TGGTTAGAAA CCCAGATGCT TTCCCTCTAG GCTCTATTTC GATATCGGGT
ACAGCGAGTA AGCTTAGCTA TCCAGCTAAT GGAACAGTAT ACACTATCAA TTTAACTTGT
GTTGGCGCGG GTGGGCAATC CACTGCTCAG CGTATTCTGA GTGGTGTAGG TTTGCCAAAT
GAAATGTAA
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| Protein sequence | MEMIKGFCLF SVFFITFGLN GAEFKEAIKG ENEKIHSLES GGTNSALDSF GVRHDINSGQ
VYLSHTDVDI PGNSKLPVRF TRIRSELEPS RNSGNQMRDW DVDVPVIMMR TVTSRENSYS
GNYKYAERWY VYPDNACSEN FPIGYNAEEY LGMYRAIKWP TLRVNGISKP LYKIEEGTAP
FPADTKFVTK DNWVSKCIFD ENNPNKNIGF LVQSPNGDKY TFDVRWRDKD HPYTRYYASK
VEDSFGNWVK YEFNNGILKR IESNDGRVIT IASSRKGGVY PYIFSDFSGF NIFSIDSITA
NDKTWSYGYE SKKIIISGSL GRVSWSVSDF LNYLTSAKDP EGLTYSYLPS EELVDDTKRI
KDTVPFYEVT NPLGAKLRMD FSKYDMCNGV FVELGVMLEF SDCIYNFSGS YSDFDFNLGK
KNIPFLSKVK ISVSENQSYD WSYKITDGLV NSENAPSRWN WSKSNWWQGP EFRVIKTTSP
SGIYQNKYNQ RQGKSYGELV ESKVYYGNSW SVVSTFVYDD QGMAGNHCPF SEKRCDQIYV
VSGNDLDVEK TFRQLSEVKQ EQDSVSYSQK FTYDSYHNLS VKEESTSEDE SVRYSQYTYH
YDPLNWYVGR LKNISISSDN ISWSKIYNLN FNDLNLPEEQ FSYGKKVMAY SYHPDGNVKK
ITYTGSNNYV LFDDYFRGEP KKVTMPCSIA NACNKVNGST VNTIVASKEI NWDGTIKAEK
DFNGNSTAFS YNSIGWLTGV EYSDPKVTKQ VITFDKVTNA DDGVLGSGIV LGQLRKVITR
GNYEQRSYFD GLFRREFTSV KDKSSENSVV YKMFEYDSDN RIVLESFPSA IASNNLGVFT
EFDSLGRTES ITRTTDNAKL THEYLAMNQV VVKDPEGNNV TTKYLSYGKP SYDKPILIQA
NDAEDTVISY SLFDQVDTIT QGNITEKRYY DSQNKLCKQV RPETGQTAFK YNSQNQLVWR
AEATAGDLNA CDADSVLESH KTRLNYDNLG QLRTEVFPDN TPSKTYSYDA NGNLIFLQAG
SVSWNYLYDS QNRLKNEILS LDGKSFELDW TYDGLGSASS LKYPSGIIID YAPNALGQPT
KAGSYASNVS YHANGQIKQF TYGNGIVRNV TLDSTGRMDL LKDSKSGVLK TSLAPSYDYN
DNLASLIDGV DTANNISNLA YDGLDRLKSA DGRWGKGSYS YDGLGNITSR SISGAAINYS
YDNLNRLNKL NGAYGYSYQY DSRGNVSHNG RYGLTFNRAN QVSEAKGIPY VYDGHNRRVK
QTKPEGSHYS VYSSAGQLLH RKVEHGSHTD SVYLGKQLIA EVENGDSSLV TSDPSVAKPS
INFNITQYTV GSSCPPKMVC ATNGITYHNI RWTTENATSC TGNVVRNPDA FPLGSISISG
TASKLSYPAN GTVYTINLTC VGAGGQSTAQ RILSGVGLPN EM
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