| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0005 |
|---|
| Symbol | |
|---|
| ID | 4017797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 6236 |
|---|
| End bp | 7441 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637953975 |
|---|
| Product | di-haem cytochrome c peroxidase |
|---|
| Protein accession | YP_561025 |
|---|
| Protein GI | 91791374 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1858] Cytochrome c peroxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTTA AAAGCCAGAA AAGTAGACTA GGCACCTTAA GCATCTGCCT TTTAGTTATC
ACAAGTTTAG CGGCCTGTGA CCAAGCAGCT ACCGTGGTAA AACATGATGC TTATCAATGG
TCCATTCCTG CAGGATTCCC AAAACCCACA GTGCCGCAAG ATAACCCTAT GTCGACGGCG
AAAGTCAGCT TAGGTCGCTA TTTATTTTAT GATAAAAACC TTTCAATGGA TCAGTCTCAA
AGCTGCGCCA GTTGTCATCT TCAGTCACAG GCTTTCGCCG AAAAACTTGT GGTTTCTATT
GGCAGCACAG GGGAGCACCA TAGGCGCAAT GCACCGGCAC TGGTTAACAT TGCCTACAAT
AAGACATTAA CTTGGGCCCA TGATGGATTG ACTGAGCTTG AGCAGCAGAT TTTACTGCCG
CTATTTGGCG AGCAGCCCAT TGAACTAGGT GCTGGCGGCA ATGAAGCGCA GATCTTGAGT
CGCCTGCAAC AGGGACCTTA CCCAAAACTG CTACAAGATG CCTTTCCCGA GCATCAAGGT
CCAATGAACT TTGTGCATGT GACTCAGGCA TTAGCCAGTT TTGTTCGCAG CCTGATTTCA
TTAAACTCCC CCTTCGATGA TTATGCCTAC CGCGGCCAAG ACTCGGCGCT TTCAGAGACA
CAACTTGCCG GCATGGGATT ATTTTTTTCT GAAAAATTCG AATGTCATCA TTGTCATGGC
GGCTTTAATT TTACTCAATC CACCAGTCAT GAGAAACAGC CGCTAGATAG AAGACCCTTT
CACAACACAG GCCTTTACTA CACCAAGAGA ATAGGATTAA CAACAACAAA GGAAGTAAGC
ATTCACTACG GCTATCCAGA AATTGACCGC GGTTTAGCTG AAGTTAGCAC AAACCCTAAG
GATGATGGCA GGTTTCGCGC CCCAAGCCTT AGGAATATCA GTTTAACCGC CCCCTATATG
CATGATGGCA GTGTGGCGAC ACTGGCGGAG GTCATAGATA TTTACGCCGC TGGTGGCCGT
AATGTCACCA CTGGCGAGCA TCAAGGCGAT GGCCGAAACA ATCCACTGAA AAGCCCTTTC
ATCAAAGGTT TTGACATAAG TGAGCAGGAA AAAATACAGC TGTTGGCCTT CTTAGAAAGC
TTAACAGACA GTGACTTTAT CACGGCGCCA CCACTGAGTG ACCCTTGGCC AGAAGCGGAA
AAATAA
|
|---|
| Protein sequence | MPFKSQKSRL GTLSICLLVI TSLAACDQAA TVVKHDAYQW SIPAGFPKPT VPQDNPMSTA
KVSLGRYLFY DKNLSMDQSQ SCASCHLQSQ AFAEKLVVSI GSTGEHHRRN APALVNIAYN
KTLTWAHDGL TELEQQILLP LFGEQPIELG AGGNEAQILS RLQQGPYPKL LQDAFPEHQG
PMNFVHVTQA LASFVRSLIS LNSPFDDYAY RGQDSALSET QLAGMGLFFS EKFECHHCHG
GFNFTQSTSH EKQPLDRRPF HNTGLYYTKR IGLTTTKEVS IHYGYPEIDR GLAEVSTNPK
DDGRFRAPSL RNISLTAPYM HDGSVATLAE VIDIYAAGGR NVTTGEHQGD GRNNPLKSPF
IKGFDISEQE KIQLLAFLES LTDSDFITAP PLSDPWPEAE K
|
|---|
| |