| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_C1115 |
|---|
| Symbol | |
|---|
| ID | 4010627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007953 |
|---|
| Strand | - |
|---|
| Start bp | 1163083 |
|---|
| End bp | 1164234 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637953711 |
|---|
| Product | OmpC family outer membrane porin |
|---|
| Protein accession | YP_556331 |
|---|
| Protein GI | 91781124 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTA TCTACACTAC GGCTCTGCTT TTTTCCCTTG CGGCTGCCGC GCACGCGCAA
AGCTCGCCGG GCTCCGGCGT CACCCTATAT GGCGTGGTGA TGTCAGGCCT GATCTACTCC
AACAACTCGC TGAAAGGCGC ATCGATCGGC ACCGCGAACG GTCCCAGCCG CTGGGGCTTC
AAGGGTGTCG AGGACCTGGG CGGCGGCACC AGCACGGTCT TCGTGCTCGA AGGCGGTTTC
AATCCGAACA CCGGCACCGC GGCGCAGGGC AGCCGGGAAT TCGGCCGCCA GGCCTACGTG
GGTCTGGCCA ACGGCCGTTA CGGCACGCTG ACCCTCGGCC GCCAGTACGA TCTCACGCAG
GACTGGCTTG CGCAGTATTC TTCGCCGCTG ATGTGGAACG GCTACACGGC GACCATCGGC
GACAACAACA ACTTCAATTA CCAGTTTCGC ACCAATAATT CGGTGAAGTA CGTGTCGCCC
TCGTATCGTG GTTTGCAGGC CGGGTTGATG TACAGCTTCG GCGGCGTGGC CGGCAGCTTC
GGCAACCAGA GCGCAGTCGG ATTCGGCGTG AACTACGCGC AAGGCCCGCT CAAGCTTTCC
GCCGCCTACA TGCGCATGAA TCATCCGGCT TCGGCAGCCA GCGAAGGCTT GTGGACCACG
GCGTCGTTCG CGTCGATCTC ACCCAGTTCG CCGACGGTCT CCTATGCGAT TGCGCCTTCG
AGCATGGAAA TTTACGGCGC GGGCGGCCAG TACGCCTTCA CCAAAGACAC GTTCGCGGGC
ATCGTCGTCA CGCATAGCCG CTACGACGAT CTGGGCGTCG CGCAACTGGG TCTCATGCAC
GGCCGCGCCA GTTACACCAA CGTCGAAGCG AACGTGAGCC ATTATTTCGC ACCCGATTAT
CAGGCTGCGA TCGACTACAC CTACACTATC GGCTCGATCC AGCCGACCGA CTTCAAACCG
CAATATCACC AGATCTCGCT GATCAACAAC TACTTCCTGT CGAGGCGAAC CGCGCTCTAT
CTGGACGGTA TCTTCCAGCT GGCTGCGGGT GATGCACAGC ACGCCAATAT TGAATACGCA
AGCGGTTCTG GCGGGGCTTC GGCGACCAAG CGTCAGGTGT CCATAACCGC TGGTATTTAT
CACCGGTTCT AA
|
|---|
| Protein sequence | MKRIYTTALL FSLAAAAHAQ SSPGSGVTLY GVVMSGLIYS NNSLKGASIG TANGPSRWGF
KGVEDLGGGT STVFVLEGGF NPNTGTAAQG SREFGRQAYV GLANGRYGTL TLGRQYDLTQ
DWLAQYSSPL MWNGYTATIG DNNNFNYQFR TNNSVKYVSP SYRGLQAGLM YSFGGVAGSF
GNQSAVGFGV NYAQGPLKLS AAYMRMNHPA SAASEGLWTT ASFASISPSS PTVSYAIAPS
SMEIYGAGGQ YAFTKDTFAG IVVTHSRYDD LGVAQLGLMH GRASYTNVEA NVSHYFAPDY
QAAIDYTYTI GSIQPTDFKP QYHQISLINN YFLSRRTALY LDGIFQLAAG DAQHANIEYA
SGSGGASATK RQVSITAGIY HRF
|
|---|
| |