| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_C0932 |
|---|
| Symbol | |
|---|
| ID | 4010445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007953 |
|---|
| Strand | + |
|---|
| Start bp | 966970 |
|---|
| End bp | 968376 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637953537 |
|---|
| Product | major facilitator superfamily multidrug efflux transporter |
|---|
| Protein accession | YP_556157 |
|---|
| Protein GI | 91780950 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.997162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.891592 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACG CTAAAACGGA TTTTCGTCCG CTATCGCTGC TAGTCGGCAG CGCTTTCTTC
ATGGAGCAGC TCGACTCCAC GATCATTGCG CCTGCTGTGC CTCAAATGGC CAAGGCGCTC
GGCGTCGGAC CTTTGAGCCT CGACCTGAGC ATGACGGTCT ACCTGCTATG CAGCGTGATC
TTCATTCCGT TAAGCGGCCT GCTAGCCGGA AGAATGGGAA CGCGCAGCAC GTTGCGACTC
TCGCTGCTGG TCTTCGTGCT GAGTTCCGCG GCGTGCGGCA TCGCGAGCAA TCTTGCGGTG
CTGATCGCCG CGCGCGCAGT GCAGGGGTTC AGTGGAGCGC TGATGGTCCC GGTCGGGCGC
ATCGCGATAG TACGTACCAC GCCACGGGAG ATGCTGGTCC CTGCGCTCGC CTGGATGATT
ACACCGGCCA TGCTCGGGCC CTTGCTAGGG CCGCCACTCG GGGGCGTCAT TGCGACGTTC
GCCTCATGGC GATGGATCTT CTTTCTTAAC ATACCCATCG GTCTTGCCGG CTGCATGCTG
GCCGAGCGCA TCGTGCCGCA GATTATTGAC GACGAGAAAC CTTCGTTCGA CTGGCGGGAA
TGGACGTTCC TATCGCTGGC GCTCGCCGCG CTCGTCGCCC TGCTAGAGCT GGCGCATCAT
ACGGACGTGC GTTGGCAGTT GTCTGCCGCG CTCGCGACAT TGCTGGGGGT TTCGACAGGA
CTTTATCTAT TTTTCGCGCG GCGCAGCGCG ACCCCGCTAC TCGACTTTTC GCTTTTACGC
TTCGAGACAT TCCATACATC GTTCTGGGCC GGAAGCATCG TGCGGATCGG CTACGGCGCA
GTGCCATTCC TGTTGCCGCT CATGCTGCAG ATCGGCCTGG GCTATAGCGC GATAGAAAGC
GGAGGGGTAC TCCTCGCGAG CGGCGCGATC GCGCTTGTGA CGAAAACACA AACAACAGGC
TTATTACGTC GTTTCGGCTT TCGTAACCTT TTAATCCTCA ATGGCATCCT GTGCTCGACT
GCCCTCGTGC TGTGCGCAGC TTTTCGCTCG GATTGGGGTA TTCTCCTGAT CGCGCTCGCC
GTGTCGGCCG GCGGTTTCTC GAGGTCAGTG CAGTTCAACG CACTGGCGGC AATTGCCTAT
GCTGATCTTC CAACACAGAA GGTCAGCGCG GCGACCACGC TCAACACCGC CGCACAGCAG
CTTGCGGTGC TGCTCGGTAT TTCGCTGGCG GTCGTCATCG TAGGTCTATC CGCGCATCTC
GGGTTGCGCG CGAAGCCGGA CGCACTCGAT TTTTCCCACG CATTCGTCGT GGTAGGACTT
ATCGCGATGG CCAGCGTGCC CTTCTGCTTC CGCCTTAGCG CTCACGCGGG ACTTAAGATG
AGTGGCCACA TTGCGCGTAA CGGATAG
|
|---|
| Protein sequence | MLDAKTDFRP LSLLVGSAFF MEQLDSTIIA PAVPQMAKAL GVGPLSLDLS MTVYLLCSVI
FIPLSGLLAG RMGTRSTLRL SLLVFVLSSA ACGIASNLAV LIAARAVQGF SGALMVPVGR
IAIVRTTPRE MLVPALAWMI TPAMLGPLLG PPLGGVIATF ASWRWIFFLN IPIGLAGCML
AERIVPQIID DEKPSFDWRE WTFLSLALAA LVALLELAHH TDVRWQLSAA LATLLGVSTG
LYLFFARRSA TPLLDFSLLR FETFHTSFWA GSIVRIGYGA VPFLLPLMLQ IGLGYSAIES
GGVLLASGAI ALVTKTQTTG LLRRFGFRNL LILNGILCST ALVLCAAFRS DWGILLIALA
VSAGGFSRSV QFNALAAIAY ADLPTQKVSA ATTLNTAAQQ LAVLLGISLA VVIVGLSAHL
GLRAKPDALD FSHAFVVVGL IAMASVPFCF RLSAHAGLKM SGHIARNG
|
|---|
| |