| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B1229 |
|---|
| Symbol | |
|---|
| ID | 4008282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | - |
|---|
| Start bp | 2012068 |
|---|
| End bp | 2013354 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637951457 |
|---|
| Product | RND efflux system membrane fusion protein |
|---|
| Protein accession | YP_554077 |
|---|
| Protein GI | 91778869 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0847833 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTTT TGCTGTTGGG ACGCCTGGCG GGAAGCCTGG TGGGAAGCCT GATCCACTCG
TTGAATGCAC CGGAGCGCCG GCGCGGCGAG GTGTGGAGGC GGCCGGCGCT CGTGTTGAGT
CTGCTTGCTT TGCTGACCGC ATGCGGCAAG CCCGCCGCTC CCGAATCGTC CCAGCCGGTC
GACGTCACCG TCATGACCGT GACGCCGCGC GATACGCCCG TGGACTTCGA GTTTGTCGCC
CAGACGCAAA GCTCGCGCGC CGTGGAAATC CGCGCGCGGG TAGACGGCTT TCTGGACAAG
CGGACCTACA CGGAGGGCCA GATGGTTCGC CAGGGGCAAA CGCTCTTTCT GATGGACCCC
AAGCCGTTCC AGGCCGCATT GCAATCGGCG CAGGGTGCGC TGGCCCAGCA GCAGGCAAGG
CTTGGCGTCG CAAAAGCCAA TCTCGCGCGC GTCGTGCCGC TCGCCGCGCA GAACGCGTTG
AGCAAGAAGG ATCTCGATGA TGCAACCGGC AGCGAGCGCG AGGCCGAAGC CGCTGTCATC
GCTGCAAAAG GCCAGGTGCA GGCCGCGCAG CTGAACCTCG GCTACACCAC GATCAAGTCG
CCGCTTGCCG GCTTGTCGAG TTACGCGAGA CAACAGGAAG GCAGCTATGT CACGCCGGCC
CAGTCCGGCC TGTTGACGTA TGTCTACCAG ATGGACCCCA TGTGGGTCGA GTTCAGCATC
TCCGAGAACG AGATGCTGCG GTATCGCGAT CAGATCGCAA AAGGCCAGTT GCGCTTTCCC
GCCAACAACC AGTTCGAAAT CACGCTGCTG CTGGCCGACG GCTCGACATT CCCCGCGCGT
GGACATATCG ACTTCGCCAA TCCCGTATTC AGCGCGGAAA CCGGCACCTT CCTCGTGCGC
GCCGTATTTG CCAATGAAAA AGGCACGCTG CGTCCTGGTC AGTTCGTGCG CGCGAGGGTG
GCCGGCGCCG TGCGGCCGCA TGCCGTGCTG CTTCCGCAGC GAGCCGTGCA GCAAGGCGCA
AAAAGCCATT TCGTGTGGAT CGTCGACAAA GATAACAAGC CCCACCAACG GTTCGTCGAG
ATGGGCGAAT GGCAGGGCGA TGACTGCTTC ATCAACGACG GCCTGCGCGC CGGCGAAAGA
GTTGTTGTGG ACGGGGCGGT GAGGCTGTCG CCCAACGCGA CGATCAGCAT AACGGGGAAC
GGTTCTTCCG CGGAGCATCG CGCAAAACTC ACGGCGCCCG TGCAGTCCGT CGCGCAATCG
GAATCCGAAC AAAACTCCGC GCATTAA
|
|---|
| Protein sequence | MPVLLLGRLA GSLVGSLIHS LNAPERRRGE VWRRPALVLS LLALLTACGK PAAPESSQPV
DVTVMTVTPR DTPVDFEFVA QTQSSRAVEI RARVDGFLDK RTYTEGQMVR QGQTLFLMDP
KPFQAALQSA QGALAQQQAR LGVAKANLAR VVPLAAQNAL SKKDLDDATG SEREAEAAVI
AAKGQVQAAQ LNLGYTTIKS PLAGLSSYAR QQEGSYVTPA QSGLLTYVYQ MDPMWVEFSI
SENEMLRYRD QIAKGQLRFP ANNQFEITLL LADGSTFPAR GHIDFANPVF SAETGTFLVR
AVFANEKGTL RPGQFVRARV AGAVRPHAVL LPQRAVQQGA KSHFVWIVDK DNKPHQRFVE
MGEWQGDDCF INDGLRAGER VVVDGAVRLS PNATISITGN GSSAEHRAKL TAPVQSVAQS
ESEQNSAH
|
|---|
| |